Gillespie.jl
Gillespie.jl: Stochastic Simulation Algorithm in Julia - Published in JOSS (2016)
@stdlib/stats-lowess
Locally-weighted polynomial regression via the LOWESS algorithm.
FlexPlan.jl
Open-source Julia tool for transmission and distribution expansion planning considering storage and demand flexibility
Capytaine
Capytaine: a Python-based linear potential flow solver - Published in JOSS (2019)
taxprofiler
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
cs-nf-pipelines
The Jackson Laboratory Computational Sciences Nextflow based analysis pipelines
MAPL
MAPL is a foundation layer of the GEOS architecture, whose original purpose is to supplement the Earth System Modeling Framework (ESMF)
causalnex
A Python library that helps data scientists to infer causation rather than observing correlation.
datatrove
Freeing data processing from scripting madness by providing a set of platform-agnostic customizable pipeline processing blocks.
science.aist
Transformation from HL7® FHIR® Audit Events to eXtensible Event Stream (XES)
code_dcf
This repository contains the firth bias reduction experiments on the few-shot distribution calibration method conducted in the ICLR 2022 spotlight paper "On the Importance of Firth Bias Reduction in Few-Shot Classification".
science.aist
Transformation from HL7® FHIR® Audit Events to Object-Centric Event Logs
doublemanning
Fits a rating curve using separate Manning's relationships for the channel (rectangular) and floodplain (power-law hypsometry)
@stdlib/utils-native-class
Determine the specification defined classification of an object.
@stdlib/math-base-napi-unary
C APIs for registering an N-API module exporting an interface for invoking a unary numerical function.
cleopy
Clara Bayley's version of the superdroplet model. CLEO is short for Cleopatra and Clouds through Lagrangian Exascale micrO-physics
qqplotr
Extending some ggplot2 functionalities by permitting the drawing of both quantile-quantile (Q-Q) and probability-probability (P-P) points, lines, and confidence bands
pyemu
python modules for model-independent uncertainty analyses, data-worth analyses, and interfacing with PEST(++)
https://github.com/cvxgrp/cvxr
An R modeling language for convex optimization problems.
kinisi
kinisi: Bayesian analysis of mass transport from molecular dynamics simulations - Published in JOSS (2024)
banks
LLM prompt language based on Jinja. Banks provides tools and functions to build prompts text and chat messages from generic blueprints. It allows attaching metadata to prompts to ease their management, and versioning is first-class citizen. Banks provides ways to store prompts on disk along with their metadata.
causalegm
A General Causal Inference Framework by Encoding Generative Modeling
MultiScaleArrays
A framework for developing multi-scale arrays for use in scientific machine learning (SciML) simulations
beeai-framework
Build production-ready AI agents in both Python and Typescript.
glue
Glue strings to data in R. Small, fast, dependency free interpreted string literals.
pestpp
tools for scalable and non-intrusive parameter estimation, uncertainty analysis and sensitivity analysis
brainglobe-napari-io
Read and write files from the BrainGlobe neuroanatomy suite
ziti
The parent project for OpenZiti. Here you will find the executables for a fully zero trust, application embedded, programmable network @OpenZiti
latrend
An R package for clustering longitudinal datasets in a standardized way, providing interfaces to various R packages for longitudinal clustering, and facilitating the rapid implementation and evaluation of new methods
https://github.com/barahona-research-group/pygenstability
PyGenStability: Multiscale community detection with generalized Markov Stability
lasio
Python library for reading and writing well data using Log ASCII Standard (LAS) files
drasyl
drasyl-java is a high-performance framework for rapid development of distributed applications
https://github.com/modelscope/data-juicer
Data processing for and with foundation models! 🍎 🍋 🌽 ➡️ ➡️🍸 🍹 🍷
DiffEqBayes
Extension functionality which uses Stan.jl, DynamicHMC.jl, and Turing.jl to estimate the parameters to differential equations and perform Bayesian probabilistic scientific machine learning
https://github.com/brentp/vcfanno
annotate a VCF with other VCFs/BEDs/tabixed files
caltechlibrary.github.io
Caltech Library's Digital Library Development sandbox.
DiffEqPhysics
A library for building differential equations arising from physical problems for physics-informed and scientific machine learning (SciML)
deerpredict
Software for the prediction of DEER and PRE data from conformational ensembles.
translate-shell
Translate text by google, bing, youdaozhiyun, haici, stardict, openai, large language model of local machine, etc at same time from CLI, GUI (GNU/Linux, Android, macOS and Windows), REPL, python, shell and vim.
rascal
The implementation of the Rascal meta-programming language (including interpreter, type checker, parser generator, compiler and JVM based run-time system)
deafrica-tools
Repository for Digital Earth Africa Sandbox, including: Jupyter notebooks, scripts, tools and workflows for geospatial analysis with Open Data Cube and xarray
mmpdb
A package to identify matched molecular pairs and use them to predict property changes.
https://github.com/cdcgov/datasets-sars-cov-2
Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)
RAMClustR
Assigning precursor-product ion relationships in indiscriminant MS/MS data
deeptime
An R package that facilitates highly customizable and reproducible visualizations of data over geological time intervals
FDboost
Boosting Functional Regression Models. The current release version can be found on CRAN (http://cran.r-project.org/package=FDboost).
terrascan
Detect compliance and security violations across Infrastructure as Code to mitigate risk before provisioning cloud native infrastructure.
plip
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
thunder
thundeR - Rapid computation and visualisation of convective parameters from rawinsonde and NWP data
opfunu
A collection of Benchmark functions for numerical optimization problems
DiffEqDevTools
Benchmarking, testing, and development tools for differential equations and scientific machine learning (SciML)
review-of-software-publication-checklist
A Checklist for reviewing software publications