robustHD
robustHD: An R package for robust regression with high-dimensional data - Published in JOSS (2021)
ERF
ERF: Energy Research and Forecasting - Published in JOSS (2023)
SuchTree
SuchTree: Fast, thread-safe computations with phylogenetic trees - Published in JOSS (2018)
VRPy
VRPy: A Python package for solving a range of vehicle routing problems with a column generation approach - Published in JOSS (2020)
Badread
Badread: simulation of error-prone long reads - Published in JOSS (2019)
UnfoldSim.jl
UnfoldSim.jl: Simulating continuous event-based time series data for EEG and beyond - Published in JOSS (2025)
KALMUS
KALMUS: tools for color analysis of films - Published in JOSS (2021)
hplc-py
hplc-py: A Python Utility For Rapid Quantification of Complex Chemical Chromatograms - Published in JOSS (2024)
OpenMD
OpenMD: A parallel molecular dynamics engine for complex systems and interfaces - Published in JOSS (2024)
ytree
ytree: A Python package for analyzing merger trees - Published in JOSS (2019)
eigentools
eigentools: A Python package for studying differential eigenvalue problems with an emphasis on robustness - Published in JOSS (2021)
diyepw
diyepw: A Python package for Do-It-Yourself EnergyPlus weather file generation - Published in JOSS (2021)
xCDAT
xCDAT: A Python Package for Simple and Robust Analysis of Climate Data - Published in JOSS (2024)
shapr
shapr: An R-package for explaining machine learning models with dependence-aware Shapley values - Published in JOSS (2019)
sptotal
sptotal: an R package for predicting totals and weighted sums from spatial data - Published in JOSS (2023)
qgs
qgs: A flexible Python framework of reduced-order multiscale climate models - Published in JOSS (2020)
IFermi
IFermi: A python library for Fermi surface generation and analysis - Published in JOSS (2021)
FTorch
FTorch: a library for coupling PyTorch models to Fortran - Published in JOSS (2025)
CiteLang
CiteLang: Modeling the Research Software Ecosystem - Published in JOSS (2022)
Your
Your: Your Unified Reader - Published in JOSS (2020)
MacroModelling.jl
MacroModelling.jl: A Julia package for developing and solving dynamic stochastic general equilibrium models - Published in JOSS (2023)
SimuPy
SimuPy: A Python framework for modeling and simulating dynamical systems - Published in JOSS (2017)
powerbox
powerbox: A Python package for creating structured fields with isotropic power spectra - Published in JOSS (2018)
crystal-torture
crystal-torture: A crystal tortuosity module - Published in JOSS (2019)
bayes_traj
bayes_traj: A Python package for Bayesian trajectory analysis - Published in JOSS (2025)
SWMManywhere
SWMManywhere: Synthesise Urban Drainage Network Models Anywhere in the World - Published in JOSS (2025)
Triumvirate
Triumvirate: A Python/C++ package for three-point clustering measurements - Published in JOSS (2023)
PyPEEC
PyPEEC: A 3D Quasi-Magnetostatic Solver using an FFT-Accelerated PEEC Method with Voxelization - Published in JOSS (2025)
DiffeRT2d
DiffeRT2d: A Differentiable Ray Tracing Python Framework for Radio Propagation - Published in JOSS (2024)
Climate variability indices for ecological and crop models in R
Climate variability indices for ecological and crop models in R: the climatrends package - Published in JOSS (2023)
The Geodynamic World Builder
The Geodynamic World Builder: A planetary structure creator for the geosciences - Published in JOSS (2024)
PowNet 2.0
PowNet 2.0: A production cost modeling framework for large-scale power systems - Published in JOSS (2025)
DearEIS - A GUI program for analyzing impedance spectra
DearEIS - A GUI program for analyzing impedance spectra - Published in JOSS (2022)
pyrolite
pyrolite: Python for geochemistry - Published in JOSS (2020)
Condor, a mathematical modeling framework for engineers with deadlines
Condor, a mathematical modeling framework for engineers with deadlines - Published in JOSS (2025)
PySensors
PySensors: A Python package for sparse sensor placement - Published in JOSS (2021)
FuseMedML
FuseMedML: a framework for accelerated discovery in machine learning based biomedicine - Published in JOSS (2023)
Jury
Jury: A Comprehensive Evaluation Toolkit - Published in JOSS (2024)
Moltres
Moltres: finite element based simulation of molten salt reactors - Published in JOSS (2018)
ExoTiC-LD
ExoTiC-LD: thirty seconds to stellar limb-darkening coefficients - Published in JOSS (2024)
corporaexplorer
corporaexplorer: An R package for dynamic exploration of text collections - Published in JOSS (2019)
bifacial_radiance
bifacial_radiance: a python package for modeling bifacial solar photovoltaic systems - Published in JOSS (2020)
nestcheck
nestcheck: error analysis, diagnostic tests and plots for nested sampling calculations - Published in JOSS (2018)
konfound
konfound: An R Sensitivity Analysis Package to Quantify the Robustness of Causal Inferences - Published in JOSS (2024)
TorchMetrics - Measuring Reproducibility in PyTorch
TorchMetrics - Measuring Reproducibility in PyTorch - Published in JOSS (2022)
WATTS
WATTS: Workflow and template toolkit for simulation - Published in JOSS (2022)
CLOVER
CLOVER: A modelling framework for sustainable community-scale energy systems - Published in JOSS (2023)
Bayesian X-ray Analysis (BXA) v4.0
Bayesian X-ray Analysis (BXA) v4.0 - Published in JOSS (2021)
mdopt: A code-agnostic tensor-network decoder for quantum error-correcting codes
mdopt: A code-agnostic tensor-network decoder for quantum error-correcting codes - Published in JOSS (2025)
Opyrability
Opyrability: A Python package for process operability analysis - Published in JOSS (2024)
NORDic
NORDic: a Network-Oriented package for the Repurposing of Drugs - Published in JOSS (2023)
audiomate
audiomate: A Python package for working with audio datasets - Published in JOSS (2020)
DRDMannTurb
DRDMannTurb: A Python package for scalable, data-driven synthetic turbulence - Published in JOSS (2024)
FIRESONG
FIRESONG: A python package to simulate populations of extragalactic neutrino sources - Published in JOSS (2021)
STITCHES
STITCHES: a Python package to amalgamate existing Earth system model output into new scenario realizations - Published in JOSS (2024)
xrnet
xrnet: Hierarchical Regularized Regression to Incorporate External Data - Published in JOSS (2019)
PATATO
PATATO: a Python photoacoustic tomography analysis toolkit - Published in JOSS (2024)
chessboard
chessboard: An R package for creating network connections based on chess moves - Published in JOSS (2023)
pyflowline
pyflowline: a mesh-independent river network generator for hydrologic models - Published in JOSS (2023)
FIGARO
FIGARO: hierarchical non-parametric inference for population studies - Published in JOSS (2024)
GRAPL
GRAPL: A computational library for nonparametric structural causal modelling, analysis and inference - Published in JOSS (2022)
GridapDistributed
GridapDistributed: a massively parallel finite element toolbox in Julia - Published in JOSS (2022)
ProgPy
ProgPy: Python Packages for Prognostics and Health Management of Engineering Systems - Published in JOSS (2023)
ivis
ivis: dimensionality reduction in very large datasets using Siamese Networks - Published in JOSS (2019)
toughio
toughio: Pre- and post-processing Python library for TOUGH - Published in JOSS (2020)
Metasyn
Metasyn: Transparent Generation of Synthetic Tabular Data with Privacy Guarantees - Published in JOSS (2025)
gaussplotR
gaussplotR: Fit, Predict and Plot 2D-Gaussians in R - Published in JOSS (2021)
x11docker
x11docker: Run GUI applications in Docker containers - Published in JOSS (2019)
secuTrialR
secuTrialR: Seamless interaction with clinical trial databases in R - Published in JOSS (2020)
VisWaterNet
VisWaterNet: A Python package for visualization of water distribution networks - Published in JOSS (2023)
MAESTROeX
MAESTROeX: A Massively Parallel Low Mach Number Astrophysical Solver - Published in JOSS (2019)
pymnet
pymnet: A Python Library for Multilayer Networks - Published in JOSS (2024)
FastGeodis
FastGeodis: Fast Generalised Geodesic Distance Transform - Published in JOSS (2022)
Pipengine
Pipengine: an ultra light YAML-based pipeline execution engine - Published in JOSS (2017)
fRAT
fRAT: an interactive, Python-based tool for region-of-interest summaries of functional imaging data - Published in JOSS (2023)
APackOfTheClones
APackOfTheClones: Visualization of clonal expansion with circle packing - Published in JOSS (2024)
SHARPy
SHARPy: A dynamic aeroelastic simulation toolbox for very flexible aircraft and wind turbines - Published in JOSS (2019)
swyft
swyft: Truncated Marginal Neural Ratio Estimation in Python - Published in JOSS (2022)
Fitspy
Fitspy: A Python package for spectral decomposition - Published in JOSS (2024)
Satisfiability.jl
Satisfiability.jl: Satisfiability Modulo Theories in Julia - Published in JOSS (2024)
pyDARTdiags: A Python package for manipulating observation sequences and calculating observation-space diagnostics for the Data Assimilation Research Testbed (DART)
pyDARTdiags: A Python package for manipulating observation sequences and calculating observation-space diagnostics for the Data Assimilation Research Testbed (DART) - Published in JOSS (2026)
TAXPASTA
TAXPASTA: TAXonomic Profile Aggregation and STAndardisation - Published in JOSS (2023)
`pygetpapers`
`pygetpapers`: a Python library for automated retrieval of scientific literature - Published in JOSS (2022)
AddaxAI
AddaxAI: A no-code platform to train and deploy custom YOLOv5 object detection models - Published in JOSS (2023)
TrixiParticles.jl
TrixiParticles.jl: Particle-based multiphysics simulation in Julia - Published in JOSS (2025)
ECabc
ECabc: A feature tuning program focused on Artificial Neural Network hyperparameters - Published in JOSS (2019)
hstrat
hstrat: a Python Package for phylogenetic inference on distributed digital evolution populations - Published in JOSS (2022)
CircuitGraph
CircuitGraph: A Python package for Boolean circuits - Published in JOSS (2020)
SurPyval
SurPyval: Survival Analysis with Python - Published in JOSS (2021)
TorchSurv
TorchSurv: A Lightweight Package for Deep Survival Analysis - Published in JOSS (2024)
ModeCouplingTheory.jl
ModeCouplingTheory.jl: A solver for mode-coupling-theory-like integro-differential equations - Published in JOSS (2023)
Caliscope
Caliscope: GUI Based Multicamera Calibration and Motion Tracking - Published in JOSS (2024)
pyMARS
pyMARS: automatically reducing chemical kinetic models in Python - Published in JOSS (2019)
Shenfun
Shenfun: High performance spectral Galerkin computing platform - Published in JOSS (2018)
Quasi-Monte Carlo Methods in Python
Quasi-Monte Carlo Methods in Python - Published in JOSS (2023)
PurpleCaffeine
PurpleCaffeine: tracking of quantum programs and experiments - Published in JOSS (2023)
Curifactory
Curifactory: A research experiment manager - Published in JOSS (2023)
Clouddrift
Clouddrift: a Python package to accelerate the use of Lagrangian data for atmospheric, oceanic, and climate sciences - Published in JOSS (2024)
ms3
ms3: A parser for MuseScore files, serving as data factory for annotated music corpora - Published in JOSS (2023)