citric
A client to the LimeSurvey Remote Control API 2, written in modern Python.
pygeoutils
A part of HyRiver software stack for handling geospatial data manipulations
pyriemann
Machine learning for multivariate data through the Riemannian geometry of positive definite matrices in Python
pynhd
A part of HyRiver software stack that provides access to NHDPlus data through web services
gradio
Build and share delightful machine learning apps, all in Python. 🌟 Star to support our work!
treeple
Scikit-learn compatible decision trees beyond those offered in scikit-learn
ezomero
A module with convenience functions for writing Python code that interacts with OMERO.
pydesrap_mms
Reproducible analytical pipeline (RAP) for Python discrete-event simulation (DES) implementing an M/M/s queueing model.
bentoml
The easiest way to serve AI apps and models - Build Model Inference APIs, Job queues, LLM apps, Multi-model pipelines, and more!
cobra
COBRApy is a package for constraint-based modeling of metabolic networks.
clinicadl
Framework for the reproducible processing of neuroimaging data with deep learning methods
cvmfs-venv
Example implementation of getting a Python virtual environment to work with CVMFS LCG views
scenedetect
:movie_camera: Python and OpenCV-based scene cut/transition detection program & library.
pytorch-ignite
High-level library to help with training and evaluating neural networks in PyTorch flexibly and transparently.
glycowork
Package for processing and analyzing glycans and their role in biology.
atmospheric-inverse-methods-for-flux-optimization
Functions for optimizing surface fluxes of some tracer to be consistent with atmospheric measurements of that tracer.
inference
Turn any computer or edge device into a command center for your computer vision projects.
wrf-python
A collection of diagnostic and interpolation routines for use with output from the Weather Research and Forecasting (WRF-ARW) Model.
https://github.com/astropy/sphinx-automodapi
Sphinx extension for generating API documentation
gpt-researcher
LLM based autonomous agent that conducts deep local and web research on any topic and generates a long report with citations.
scikit-surgerycore
SciKit-SurgeryCore implements algorithms and tools that are common to all SciKit-Surgery packages
cashocs
computational adjoint-based shape optimization and optimal control software for python
luigi
Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.
lightgbm
A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks.
reaction-network
Reaction Network is a Python package for predicting likely inorganic chemical reaction pathways using graph theoretical methods. Project led by @mattmcdermott (formerly at Berkeley Lab).
https://github.com/astropy/extension-helpers
Helpers to assist with building Python packages with compiled C/Cython extensions
casadi
CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python or Matlab/Octave.
tfer-pma
Code in multiple languages to evaluate the transfer function for particle mass analyzers (including the APM and CPMA), including a web app and Matlab version (cf. github.com/tsipkens/mat-tfer-pma).
drugbank-downloader
Don't worry about DrugBank licensing - write code that knows how to download it automatically
https://github.com/alan-turing-institute/clevercsv
CleverCSV is a Python package for handling messy CSV files. It provides a drop-in replacement for the builtin CSV module with improved dialect detection, and comes with a handy command line application for working with CSV files.
spectrafit
📊📈🔬 SpectraFit is a command-line and Jupyter-notebook tool for quick data-fitting based on the regular expression of distribution functions.
jsonargparse
Implement minimal boilerplate CLIs derived from type hints and parse from command line, config files and environment variables
SciMLBenchmarks
Scientific machine learning (SciML) benchmarks, AI for science, and (differential) equation solvers. Covers Julia, Python (PyTorch, Jax), MATLAB, R
orthoseg
OrthoSeg makes it easy to train neural networks to segment orthophotos.
asreview-makita
Workflow generator for simulation studies using the command line interface of ASReview LAB
yascheduler
Yet another cloud computing scheduler for the high-throughput cloud scientific simulations
pyhelpers
PyHelpers: An open-source toolkit for facilitating Python users' data manipulation tasks
python-cmethods
A collection of bias correction techniques written in Python - for climate sciences.
catalyst
Accelerated deep learning R&D
pandapower
Convenient Power System Modelling and Analysis based on PYPOWER and pandas
benchexec
BenchExec: A Framework for Reliable Benchmarking and Resource Measurement
tensorzero
TensorZero is an open-source stack for industrial-grade LLM applications. It unifies an LLM gateway, observability, optimization, evaluation, and experimentation.
