brms • Rank 22.7 • Science 49%

brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan

swatpy • Rank 4.7 • Science 67%

a set of python modules to work with the Soil and Water Assessment Tool (SWAT), including model run, programmatic config edits, simulation readouts and callibration with the fantastic SPOTPY package

cocolessons • Rank 4.7 • Science 67%

Course material for the bilingual (Spanish, English) Code to Communicate program.

waveorder • Rank 12.7 • Science 59%

Wave optical models and inverse algorithms for label-agnostic imaging of density & orientation.

exoctk • Rank 12.7 • Science 59%

The Exoplanet Characterization Tool Kit

pilgram • Rank 17.7 • Science 54%

A python library for instagram filters

eq5d • Rank 12.7 • Science 59%

mel-cepstral-distance • Rank 4.7 • Science 67%

A Python library for computing the Mel-Cepstral Distance (Mel-Cepstral Distortion, MCD) between two inputs. This implementation is based on the method proposed by Robert F. Kubichek in "Mel-Cepstral Distance Measure for Objective Speech Quality Assessment".

graphite • Rank 17.7 • Science 54%

GRAPH Interaction from pathway Topological Environment

healthkitonfhir • Rank 7.7 • Science 64%

Converts HealthKit data to HL7 FHIR resources

TropFishR • Rank 12.7 • Science 59%

Tropical Fisheries Analysis with R

BoundaryValueDiffEq • Rank 17.7 • Science 54%

Boundary value problem (BVP) solvers for scientific machine learning (SciML)

xpressplot • Rank 4.7 • Science 67%

A toolkit for navigating and analyzing gene expression datasets

tabula — Peer-reviewed • Rank 4.7 • Science 67%

tabula: An R Package for Analysis, Seriation, and Visualization of Archaeological Count Data - Published in JOSS (2019)

gpuocean • Rank 4.7 • Science 67%

fathon — Peer-reviewed • Rank 12.7 • Science 59%

fathon: A Python package for a fast computation of detrendend fluctuation analysis and related algorithms - Published in JOSS (2020)

zero-to-hero-in-r • Rank 4.7 • Science 67%

An Arabic course to introduce R

uniparser-yawarana • Rank 4.7 • Science 67%

A morphological parser for Yawarana (yaba1248).

transforemotion • Rank 4.7 • Science 67%

Sentiment Analysis for Text, Image and Video Using Transformer Models

contrabass • Rank 4.7 • Science 67%

Constraint-based model vulnerabilities analysis - Python analysis tool http://contrabass.unizar.es

awesome-mmps • Rank 4.7 • Science 67%

Corpus of resources for multimodal machine learning with physiological signals (mmps).

dtool-lookup-gui • Rank 9.7 • Science 62%

Graphical user interface for dtool and dserver written in Python and GTK3.

hybpiper • Rank 7.6 • Science 64%

Recovering genes from targeted sequence capture data

tsam • Rank 17.6 • Science 54%

Time series aggregation module (tsam). Determines typical operation periods or dereases the temporal resolution. Accelerates model or experiment runs.

uncertainty-wizard • Rank 4.6 • Science 67%

Uncertainty-Wizard is a plugin on top of tensorflow.keras, allowing to easily and efficiently create uncertainty-aware deep neural networks. Also useful if you want to train multiple small models in parallel.

https://github.com/cheind/py-motmetrics • Rank 22.6 • Science 49%

:bar_chart: Benchmark multiple object trackers (MOT) in Python

ckanext-contact • Rank 9.6 • Science 62%

A CKAN extension for adding popup contact forms to pages.

https://github.com/cda-tum/mnt-siqad-plugins • Rank 4.6 • Science 67%

Physical Simulation Engines for Silicon Dangling Bonds

LFAToolkit • Rank 4.6 • Science 67%

Local Fourier Analysis for arbitrary order finite element type operators

watertap • Rank 17.6 • Science 54%

The WaterTAP development repository

metagem • Rank 7.6 • Science 64%

:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

MTA • Rank 9.6 • Science 62%

Multiscalar Territorial Analysis

msdbook • Rank 9.6 • Science 62%

eBook: Addressing Uncertainty in MultiSector Dynamics Research

pypdf • Rank 35.6 • Science 36%

A pure-python PDF library capable of splitting, merging, cropping, and transforming the pages of PDF files

mmdetection_test • Rank 7.6 • Science 64%

cutesv • Rank 12.6 • Science 59%

Long read based human genomic structural variation detection with cuteSV

rapidtide • Rank 12.6 • Science 59%

rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data

https://github.com/cheminfo/multiplet-analysis • Rank 12.6 • Science 59%

Analyse multiplet

cartorio • Rank 4.6 • Science 67%

A wrapper on the logging module for Python that provides a simple and easy to use interface for logging.

interactive_data_editor • Rank 4.6 • Science 67%

A Software to interactively edit data in a graphical manner

soccernet-calibration-sportlight • Rank 4.6 • Science 67%

SoccerNet@CVPR | 1st place solution for Camera Calibration Challenge 2023

stringdist • Rank 22.6 • Science 49%

String distance functions for R

scvi-tools • Rank 22.6 • Science 49%

Deep probabilistic analysis of single-cell and spatial omics data

Cylc — Peer-reviewed • Rank 12.6 • Science 59%

Cylc: A Workflow Engine for Cycling Systems - Published in JOSS (2018)

vptstools • Rank 4.6 • Science 67%

Python library to transfer and convert vertical profile time series data

sithom • Rank 7.5 • Science 64%

A package for shared utility scripts.

chess_bead • Rank 4.5 • Science 67%

Package for the both chess and Chinese poetry game. Inspired by Das Glasperlenspiel by Hermann Hesse.

pipenv • Rank 35.5 • Science 36%

Python Development Workflow for Humans.

kafka-python • Rank 35.5 • Science 36%

Python client for Apache Kafka

mikrokondo • Rank 4.5 • Science 67%

A simple pipeline for bacterial assembly and quality control

sdds • Rank 12.5 • Science 59%

Python 3 package to handle SDDS files

sasrec.pytorch • Rank 7.5 • Science 64%

PyTorch(1.6+) implementation of https://github.com/kang205/SASRec

lxml • Rank 35.5 • Science 36%

The lxml XML toolkit for Python

bandle • Rank 12.5 • Science 59%

An R package for Bayesian analysis of differential localisation experiments

qtl2 • Rank 12.5 • Science 59%

QTL analysis software for high-dimensional data and complex cross designs

nbproject • Rank 14.5 • Science 57%

Light-weight Jupyter notebook tracker.

ecourts • Rank 4.5 • Science 67%

Python library to help scrape Indian Court Orders from the ecourts website

coproid • Rank 4.5 • Science 67%

Coprolite host Identification pipeline

ccsd • Rank 7.5 • Science 64%

Combinatorial Complex Score-based Diffusion model using stochastic differential equations

TreeSearch • Rank 12.5 • Science 59%

R package for phylogenetic tree search under inapplicable-corrected parsimony and custom optimality criteria

https://github.com/catalyst-cooperative/ferc-xbrl-extractor • Rank 12.5 • Science 59%

A tool for converting FERC filings published in XBRL into SQLite databases

gnina • Rank 12.5 • Science 59%

A deep learning framework for molecular docking

io.joern:c2cpg_2.13 • Rank 17.5 • Science 54%

Open-source code analysis platform for C/C++/Java/Binary/Javascript/Python/Kotlin based on code property graphs. Discord https://discord.gg/vv4MH284Hc

pypolyline • Rank 4.5 • Science 67%

Fast Google Polyline encoding and decoding using a Rust binary

street-network-models • Rank 4.5 • Science 67%

Street network models and indicators for every urban area in the world

metagenomics-analysis • Rank 7.5 • Science 64%

Data Processing and Visualization for Metagenomics

nhdplusTools • Rank 14.4 • Science 57%

See official repository at: https://code.usgs.gov/water/nhdplusTools

anastruct • Rank 17.4 • Science 54%

2D structural analysis in Python

mrvalidation • Rank 4.4 • Science 67%

Package contains routines to prepare data for validation exercises.

dea_limma • Rank 4.4 • Science 67%

A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) analyses (DEA) on NGS data powered by the R package limma.

readfish • Rank 12.4 • Science 59%

CLI tool for flexible and fast adaptive sampling on ONT sequencers

tfs-pandas • Rank 12.4 • Science 59%

Python package to handle TFS files

coverage • Rank 35.4 • Science 36%

The code coverage tool for Python

jekyll-pages-novice • Rank 7.4 • Science 64%

Building Websites with Jekyll & GitHub Pages.

loraenergysim • Rank 4.4 • Science 67%

LoRa Network Simulator to Monitor Energy Consumption

perbase • Rank 17.4 • Science 54%

Per-base per-nucleotide depth analysis

dla-future-fortran • Rank 4.4 • Science 67%

Fortran interface for DLA-Future

https://github.com/sktime/pytorch-forecasting • Rank 25.4 • Science 46%

Time series forecasting with PyTorch

grass • Rank 12.4 • Science 59%

GRASS - free and open-source geospatial processing engine

aggregate • Rank 12.4 • Science 59%

Tools for creating and working with aggregate probability distributions.

who-owns-mass-processing • Rank 4.4 • Science 67%

Deduplicates property owners in Massachusetts using the MassGIS standardized assessors' parcel dataset and the OpenCorporates Bulk Data product.

Delira — Peer-reviewed • Rank 12.4 • Science 59%

Delira: A High-Level Framework for Deep Learning in Medical Image Analysis - Published in JOSS (2019)

tango • Rank 17.4 • Science 54%

Organize your experiments into discrete steps that can be cached and reused throughout the lifetime of your research project.

https://github.com/epistasislab/tpot2 • Rank 12.4 • Science 59%

A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

huspacy • Rank 7.3 • Science 64%

HuSpaCy: industrial-strength Hungarian natural language processing

symbolicai • Rank 17.3 • Science 54%

A neurosymbolic perspective on LLMs

exllsm-circuit-reconstruction • Rank 4.3 • Science 67%

Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery

pointedsdms • Rank 12.3 • Science 59%

Wrapper function for 'inlabru' for modeling species distribution models from disparate datasets.

NbodyGradient • Rank 7.3 • Science 64%

N-body integrator computes derivatives with respect to initial conditions for TTVs, RV, Photodynamics & more

virtualenv • Rank 35.3 • Science 36%

Virtual Python Environment builder

mllmcelltype • Rank 12.3 • Science 59%

🏆 #1 Multi-LLM consensus framework | 550+ stars | 95% accuracy | 10+ LLM providers | Leading cell annotation tool

giscoR • Rank 14.3 • Science 57%

Download geospatial data from GISCO API - Eurostat

pennylane • Rank 25.3 • Science 46%

PennyLane is a cross-platform Python library for quantum computing, quantum machine learning, and quantum chemistry. Built by researchers, for research.

exactextract • Rank 17.3 • Science 54%

Fast and accurate raster zonal statistics

vegas • Rank 12.3 • Science 59%

Adaptive multidimensional Monte Carlo integration.

flitc-application • Rank 4.3 • Science 67%

A data-driven deep learning based fault diagnosis application for radial, active distribution grids

pyelli • Rank 12.3 • Science 59%

An open source ellipsometry analysis tool for reproducible and comprehensible building of optical models.

pyscreener — Peer-reviewed • Rank 12.3 • Science 59%

pyscreener: A Python Wrapper for Computational Docking Software - Published in JOSS (2022)

powergenome • Rank 12.3 • Science 59%

A tool to quickly and easily create inputs for power systems models

moire-lattice-generator • Rank 4.2 • Science 67%

Simple python code to interactively generate visualizations of moire patterns of hexagonal lattices such as magic angle bilayer graphene.