spinnmachine
A python module which contains a representation of the SpiNNaker Machine
DeconvOptim
A multi-dimensional, high performance deconvolution framework written in Julia Lang for CPUs and GPUs.
fgivenx
fgivenx: A Python package for functional posterior plotting - Published in JOSS (2018)
https://github.com/broadinstitute/ssgsea2.0
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
daedalus.api
[UNDER DEVELOPMENT] API server for the DAEDALUS model via the R package {daedalus}
impactx
high-performance modeling of beam dynamics in particle accelerators with collective effects
openresearchcalendar.github.io
Documentation & Code for the community tool: 'Open Research Calendar'
sl_sensor
SL Sensor: An open-source, real-time and ROS-based structured light sensor for high accuracy construction robotic applications
transformer-srl
Reimplementation of a BERT based model (Shi et al, 2019), currently the state-of-the-art for English SRL. This model implements also predicate disambiguation.
libspatialindex
C++ implementation of R*-tree, an MVR-tree and a TPR-tree with C API
sccomp
Mixed-effect model to test differences in cell type proportions from single-cell data, in R
diffjpeg-jax
Official and maintained implementation of the paper "Differentiable JPEG: The Devil is in the Details" (WACV 2024)
https://github.com/chaoss/grimoirelab-perceval
Send Sir Perceval on a quest to retrieve and gather data from software repositories.
ml-visuals
🎨 ML Visuals contains figures and templates which you can reuse and customize to improve your scientific writing.
python-ecology-lesson
Data Analysis and Visualization in Python for Ecologists
Multiphonon
Multiphonon: Phonon Density of States tools for Inelastic Neutron Scattering Powder Data - Published in JOSS (2018)
bfsl
Best-fit straight line of bivariate data with errors in both coordinates.
Adeft
Adeft: Acromine-based Disambiguation of Entities from Text with applications to the biomedical literature - Published in JOSS (2020)
gval
A high-level Python framework to evaluate the skill of geospatial datasets by comparing candidates to benchmark maps producing agreement maps and metrics.
backbone
R backbone package - Extract the backbone from weighted and unweighted networks
libre-chat
🦙 Free and Open Source Large Language Model (LLM) chatbot web UI and API. Self-hosted, offline capable and easy to setup.
PolSAR tools
PolSAR tools: A QGIS plugin for generating SAR descriptors - Published in JOSS (2021)
countryinfo
A python module for returning data about countries, ISO info and states/provinces within them.
sparql-llm
🦜✨ Chat system and reusable components to improve LLMs capabilities when generating SPARQL queries
https://github.com/dnlbauer/WHAM
An efficient, multithreaded weighted histogram analysis (WHAM) implementation for the post-processing of umbrella MD simulations.
chromatographr
Toolset for the reproducible analysis of chromatography data in R (HPLC-DAD/UV, GC-FID).
https://github.com/becksteinlab/propkatraj
pKa estimates for proteins using an ensemble approach
thoraxe
Use Thor's Axe to cut exons into their evolutionary building blocks :zap:
https://github.com/benchmark-urbanism/cityseer-api
Computational tools for urban analysis
https://github.com/theochem/iodata
Python library for reading, writing, and converting computational chemistry file formats and generating input files.
llm-lct-sequencing
AI Semantic Insights: LLM Toolkit for Analysing Educational Practices and Knowledge Building.
macad-gym
Multi-Agent Connected Autonomous Driving (MACAD) Gym environments for Deep RL. Code for the paper presented in the Machine Learning for Autonomous Driving Workshop at NeurIPS 2019:
mljar-supervised
Python package for AutoML on Tabular Data with Feature Engineering, Hyper-Parameters Tuning, Explanations and Automatic Documentation
sccustomize
R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
seissol
A scientific software for the numerical simulation of seismic wave phenomena and earthquake dynamics
https://github.com/uxlfoundation/scikit-learn-intelex
Extension for Scikit-learn is a seamless way to speed up your Scikit-learn application
tanabesugano
A python-solver for Tanabe-Sugano and energy-correlation diagrams
clima
The CBE Clima Tool is a web-based application built to support the need of architects and engineers interested in climate-adapted design. It allows users to analyze the climate data of more than 27,500 locations worldwide using the data contained in EPW files.
Phonetic Algorithms in R
Phonetic Algorithms in R - Published in JOSS (2018)
surprisal
A unified interface for computing surprisal (log probabilities) from language models! Supports neural, symbolic, and black-box API models.
