scikit-surgerytf
Examples for running surgical segmentations using Tensor Flow
daten_der_notaufnahmesurveillance
Der Datensatz 'Notaufnahmesurveillance' enthält aggregierte Daten der Routinedokumentation aus einer Auswahl deutscher Notaufnahmen aus dem AKTIN-Notaufnahmeregister und bildet die Grundlage für die Notaufnahmesurveillance am RKI.
euryale
A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA
msgpack-python
MessagePack serializer implementation for Python msgpack.org[Python]
discregrid
A static C++ library for the generation of discrete functions on a box-shaped domain. This is especially suited for the discretization of signed distance fields.
https://github.com/alan-turing-institute/trustchain
Trustworthy decentralised PKI
viztracer
A debugging and profiling tool that can trace and visualize python code execution
hcestimator.jl
This library provides a Distributed Energy Resources' Hosting Capacity estimation of distribution systems considering that the Distribution Company can partially dispatch other DERs installed in the system.
hypertext2019
Paper and poster to revive the original idea of hypertext based on transclusion
corona-datenspende_teildatensatz_vitaldaten
Die Daten von Fitnessarmbändern und SmartwatchesDie Daten von Fitnessarmbändern und Smartwatches, sogenannten Wearables, können Hinweise auf Symptome einer COVID-19 Erkrankung liefern. Mit Hilfe der Corona-Datenspende-App (CDA) konnten Bürger:innen dem Robert Koch-Institut solche Daten für wissenschaftliche Zwecke zur Verfügung stellen.
zigguratgaussian
Fast Gaussian distributed pseudorandom number generation in Java via the Ziggurat algorithm
climate_community_crossrealm
Comparisons of community responses to temperature change across realms
reductstore
High Performance Storage and Streaming Solution for Data Acquisition Systems
omamer
OMAmer - tree-driven and alignment-free protein assignment to sub-families
code-bert-score
CodeBERTScore: an automatic metric for code generation, based on BERTScore
https://github.com/ourownstory/neural_prophet
NeuralProphet: A simple forecasting package
grad-cam
Advanced AI Explainability for computer vision. Support for CNNs, Vision Transformers, Classification, Object detection, Segmentation, Image similarity and more.
sport-activities-features
A minimalistic toolbox for extracting features from sports activity files written in Python
MITgcm
M.I.T General Circulation Model master code and documentation repository
@catala-lang/french-law
Programming language for literate programming law specification
https://github.com/nixtla/neuralforecast
Scalable and user friendly neural :brain: forecasting algorithms.
stata
All my code is belong to you. In Stata, do: net from https://github.com/bbdaniels/stata/raw/main/
emnlp23-paraphrase-types
The official implementation of the EMNLP 2023 paper "Paraphrase Types for Generation and Detection"
https://github.com/aureme/padmet
Python library for hAndling metaData of METabolism.
elementembeddings
Python package to interact with high-dimensional representations of the chemical elements
Integrals
A common interface for quadrature and numerical integration for the SciML scientific machine learning organization
cmstatr
cmstatr: An R Package for Statistical Analysis of Composite Material Data - Published in JOSS (2020)
dea-tools
Open-source Jupyter Notebooks and Python tools for geospatial analysis with Digital Earth Australia, Open Data Cube, and Xarray
https://github.com/cbg-ethz/mnem
Mixture Nested Effects Models - https://doi.org/10.1093/bioinformatics/bty602 - https://bioconductor.org/packages/mnem
https://github.com/alleninstitute/et_connectivity
Code used to analyze the connectivity of ET neurons in MICrONs dataset
https://github.com/alleninstitute/ace
R Shiny app for comparison of annotations (e.g., cell type assignments)
covid-are-konsultationsinzidenz
Im Datensatz "COVID-ARE-Konsultationsinzidenz" des Robert Koch-Instituts werden wöchentliche Inzidenzen von ambulanten Konsultationen mit akuter respiratorischer Erkrankung (ARE) und zusätzlicher COVID-19-Diagnose in Deutschland bereitgestellt. Über das syndromische Surveillance-Modul SEED-ARE werden aus Sentinelpraxen Daten von gesetzlich versi...
fingernat-pymol-plugin
PyMOL plugin to visualize interactions detected by the fingeRNAt program
https://github.com/chains-project/breaking-good
make breaking updates look good 👗 https://arxiv.org/abs/2407.03880
pdf-annotation-extractor-alfred
Alfred Workflow to extract annotations from PDF files.
ena-upload-cli
ENA upload cli - script your Open Data upload to the European Nucleotide Archive
https://github.com/ijl/orjson
Fast, correct Python JSON library supporting dataclasses, datetimes, and numpy
lgn-autoencoder
Lorentz group equivariant autoencoders based on Lorentz Group Network
synthetic-gravity-waves
Python package for generating synthetic gravity waves used in machine learning training
picaxe
work with the Flickr API to upload images, sort images, generate MD image reference links etc
planarfibers
Bauer, J. K., & Böhlke, T. (2022). On the dependence of orientation averaging mean field homogenization on planar fourth-order fiber orientation tensors. Mechanics of Materials, 104307.
rangeland
Pipeline for remotely sensed imagery. The pipeline processes satellite imagery alongside auxiliary data in multiple steps to arrive at a set of trend files related to land-cover changes.
bicycling-infrastructure-classification
Developing a bicycling infrastructure classification system for Greater Melbourne using OpenStreetMap
cb-platon
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
globalmatch
GlobalMatch: Registration of forest terrestrial point clouds by global matching of relative stem positions [ISPRS 2023]
scadnano
Python scripting library for generating designs readable by scadnano.
BioCor
Package to calculate functional similarity between genes https://biocor.llrs.dev
tweetynet
Hybrid convolutional-recurrent neural networks for segmentation of birdsong and classification of elements
gromacswrapper
GromacsWrapper wraps system calls to GROMACS tools into thin Python classes (GROMACS 4.6.5 - 2024 supported).
clawpack
Package for solving hyperbolic systems of partial differential equations
opencv-python
Automated CI toolchain to produce precompiled opencv-python, opencv-python-headless, opencv-contrib-python and opencv-contrib-python-headless packages.