neurips21-self-supervised-bug-detection-and-repair • Rank 6.1 • Science 54%

Replication Code for "Self-Supervised Bug Detection and Repair" NeurIPS 2021

@stdlib/stats-base-dsemch • Rank 3.1 • Science 57%

Calculate the standard error of the mean for a double-precision floating-point strided array using a one-pass trial mean algorithm.

@stdlib/stats-base-dstdevch • Rank 3.1 • Science 57%

Calculate the standard deviation of a double-precision floating-point strided array using a one-pass trial mean algorithm.

data-visualization-tutorial • Rank 6.1 • Science 54%

A modular 4-hour tutorial in Data Visualization

erkale • Rank 6.1 • Science 54%

ERKALE -- HF/DFT from Hel

https://github.com/brainglobe/brainreg-napari • Rank 9.1 • Science 51%

Automated 3D brain registration in napari with support for multiple species and atlases.

ArnoldiMethod • Rank 16.1 • Science 44%

The Arnoldi Method with Krylov-Schur restart, natively in Julia.

tamaas • Rank 9.1 • Science 51%

Tamaas is a C++ library with a Python interface to efficiently solve contact mechanics problems with periodic rough surfaces, plasticity, adhesion and friction.

https://github.com/ctriermaansson/dnafusion • Rank 11.1 • Science 49%

Identification of gene-fusions, including EML4-ALK

https://github.com/khoj-ai/khoj • Rank 24.1 • Science 36%

Your AI second brain. Self-hostable. Get answers from the web or your docs. Build custom agents, schedule automations, do deep research. Turn any online or local LLM into your personal, autonomous AI (gpt, claude, gemini, llama, qwen, mistral). Get started - free.

ichthyop • Rank 6.1 • Science 54%

A Lagrangian tool for simulating ichthyoplankton dynamics

@digitallinguistics/scription2dlx • Rank 6.1 • Science 54%

A JavaScript library that converts scription text files to the Data Format for Digital Linguistics

stk • Rank 6.1 • Science 54%

The STK is a (not so) Small Toolbox for Kriging. Its primary focus is on the interpolation/regression technique known as kriging, which is very closely related to Splines and Radial Basis Functions, and can be interpreted as a non-parametric Bayesian method using a Gaussian Process (GP) prior.

https://github.com/althonos/nafcodec • Rank 11.1 • Science 49%

Rust coder/decoder for Nucleotide Archival Format (NAF) files.

https://github.com/cadet/rdm-example-simulated-moving-bed • Rank 1.1 • Science 59%

CADET case study from paper: Efficient numerical simulation of simulated moving bed chromatography with a single-column solver (He et al.)

@stdlib/blas-ext-base-sapxsumkbn2 • Rank 3.1 • Science 57%

Add a constant to each single-precision floating-point strided array element and compute the sum using a second-order iterative Kahan–Babuška algorithm.

@stdlib/blas-ext-base-gsort2sh • Rank 3.1 • Science 57%

Simultaneously sort two strided arrays based on the sort order of the first array using Shellsort.

dasymetric-toolbox-arcgispro • Rank 3.1 • Science 57%

@stdlib/stats-base-snanstdevch • Rank 3.1 • Science 57%

Calculate the standard deviation of a single-precision floating-point strided array ignoring NaN values and using a one-pass trial mean algorithm.

@stdlib/stats-base-sstdevyc • Rank 3.1 • Science 57%

Calculate the standard deviation of a single-precision floating-point strided array using a one-pass algorithm proposed by Youngs and Cramer.

sitreg • Rank 3.1 • Science 57%

Deep learning intra-modality image registration arhitecture fulfilling strict symmetry properties

@stdlib/blas-ext-base-dsort2sh • Rank 3.1 • Science 57%

Simultaneously sort two double-precision floating-point strided arrays based on the sort order of the first array using Shellsort.

biovalidator • Rank 6.1 • Science 54%

JSON validator derived from AJV supporting ontology and taxonomy validation.

eel • Rank 24.1 • Science 36%

A little Python library for making simple Electron-like HTML/JS GUI apps

d3pm • Rank 6.1 • Science 54%

Minimal Implementation of a D3PM in pytorch

ncvue • Rank 11.1 • Science 49%

A minimal GUI for a quick view of netcdf files. Aiming to be a drop-in replacement for ncview.

mpcsl • Rank 6.1 • Science 54%

A Modular Pipeline for Causal Structure Learning called MPCSL.

pycirclize • Rank 16.1 • Science 44%

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

sparse • Rank 24.1 • Science 36%

Sparse multi-dimensional arrays for the PyData ecosystem

https://github.com/cytomining/copairs • Rank 11.1 • Science 49%

Find profile pairs and compute metrics between them.

pygpsclient • Rank 16.1 • Science 44%

Python Graphical GPS Client Application supporting NMEA, UBX, SBF, RTCM3, NTRIP & SPARTN Protocols

https://github.com/bactopia/bactopia-py • Rank 11.1 • Science 49%

A Python package for working with Bactopia

echor • Rank 14.1 • Science 46%

Download EPA ECHO data in R

flixopt • Rank 11.1 • Science 49%

Vector based Energy Optimization Framework

bikenwgrowth • Rank 6.1 • Science 54%

Source code for the paper "Growing urban bicycle networks", exploring algorithmically the limitations of urban bicycle network growth

@stdlib/stats-base-dsemwd • Rank 3.0 • Science 57%

Calculate the standard error of the mean for a double-precision floating-point strided array using Welford's algorithm.

@stdlib/stats-base-dnanstdevwd • Rank 3.0 • Science 57%

Calculate the standard deviation of a double-precision floating-point strided array ignoring NaN values and using Welford's algorithm.

@stdlib/stats-base-dnanstdevpn • Rank 3.0 • Science 57%

Calculate the standard deviation of a double-precision floating-point strided array ignoring NaN values and using a two-pass algorithm.

@stdlib/stats-base-snanstdevyc • Rank 3.0 • Science 57%

Calculate the standard deviation of a single-precision floating-point strided array ignoring NaN values and using a one-pass algorithm proposed by Youngs and Cramer.

@stdlib/stats-base-dsvariancepn • Rank 3.0 • Science 57%

Calculate the variance of a single-precision floating-point strided array using a two-pass algorithm with extended accumulation and returning an extended precision result.

@stdlib/stats-base-nanstdevyc • Rank 3.0 • Science 57%

Calculate the standard deviation of a strided array ignoring NaN values and using a one-pass algorithm proposed by Youngs and Cramer.

git-lint • Rank 16.0 • Science 44%

A command line interface for linting Git commits.

https://github.com/dafny-lang/dafny • Rank 24.0 • Science 36%

Dafny is a verification-aware programming language

apex • Rank 14.0 • Science 46%

Phylogenetic Methods for Multiple Gene Data

pal • Rank 6.0 • Science 54%

Positional Astronomy Library

proxsuite • Rank 19.0 • Science 41%

The Advanced Proximal Optimization Toolbox

epwshiftr • Rank 11.0 • Science 49%

Create future EnergyPlus Weather files using CMIP6 data

blik • Rank 11.0 • Science 49%

Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.

functionalplus • Rank 16.0 • Science 44%

Functional Programming Library for C++. Write concise and readable C++ code.

ParallelMergeCSR • Rank 3.0 • Science 57%

Merge-based Parallel Sparse Matrix-Vector Multiplication in Julia

@stdlib/stats-base-snanstdevwd • Rank 3.0 • Science 57%

Calculate the standard deviation of a single-precision floating-point strided array ignoring NaN values and using Welford's algorithm.

pathogenseq • Rank 3.0 • Science 57%

Pathogen whole genome sequence (WGS) data analysis pipeline

particle_conversion • Rank 3.0 • Science 57%

Transient ODE Solver of heterogeneous particle conversion processes for combustion or gasification processes

@stdlib/blas-ext-base-snansumkbn2 • Rank 3.0 • Science 57%

Calculate the sum of single-precision floating-point strided array elements, ignoring NaN values and using a second-order iterative Kahan–Babuška algorithm.

@stdlib/datasets-harrison-boston-house-prices-corrected • Rank 3.0 • Science 57%

A (corrected) dataset derived from information collected by the US Census Service concerning housing in Boston, Massachusetts (1978).

@stdlib/stats-base-sstdevwd • Rank 3.0 • Science 57%

Calculate the standard deviation of a single-precision floating-point strided array using Welford's algorithm.

phepy • Rank 3.0 • Science 57%

Intuitive evaluation of out-of-distribution detectors using simple toy examples.

FdeSolver • Rank 6.0 • Science 54%

FdeSolver.jl: A Julia package for the numerical solution of fractional differential equations (FDEs) as well as systems of equations.

bayes-prereg • Rank 6.0 • Science 54%

uk.ac.cam.ch.wwmm.oscar • Rank 11.0 • Science 49%

OSCAR (Open Source Chemistry Analysis Routines) is an open source extensible system for the automated annotation of chemistry in scientific articles.

https://github.com/coin-or/ipopt • Rank 11.0 • Science 49%

COIN-OR Interior Point Optimizer IPOPT

stars • Rank 24.0 • Science 36%

Spatiotemporal Arrays, Raster and Vector Data Cubes

pypsa-ariadne • Rank 6.0 • Science 54%

🛑 THIS REPOSITORY IS DEPRECATED 🟢 The story continues at PyPSA-DE High resolution, sector-coupled model of the German Energy System

BasicLU • Rank 6.0 • Science 54%

A Julia Interface to BasicLU

epidemics • Rank 6.0 • Science 54%

A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.

https://github.com/cbib/virhunter • Rank 6.0 • Science 54%

Deep Learning method for novel virus detection in sequencing data

sgvb-psd • Rank 6.0 • Science 54%

Multivariate PSD estimation using VI (https://arxiv.org/abs/2409.13224v1)

vmrseq • Rank 10.9 • Science 49%

An R package for detecting cell-to-cell variably methylated regions (VMRs) from single-cell bisulfite sequencing leveraging probabilistic models.

welib • Rank 10.9 • Science 49%

Wind energy library, python and matlab tools for wind turbines analyses

openet-ssebop • Rank 10.9 • Science 49%

Earth Engine SSEBop ET Model

https://github.com/althonos/mini3di • Rank 10.9 • Science 49%

A NumPy port of the foldseek code for encoding protein structures to 3di.

lpdaac-data-resources • Rank 5.9 • Science 54%

This repository is a place to find data user resources that demonstrate how to use LP DAAC tools, services, and data.

uapca • Rank 5.9 • Science 54%

Uncertainty-aware principal component analysis.

nbgitpuller-link • Rank 5.9 • Science 54%

Generate an nbgitpuller link through a CLI

mitoClone2 • Rank 10.9 • Science 49%

BioC Package Version

https://github.com/carla-simulator/carla • Rank 23.9 • Science 36%

Open-source simulator for autonomous driving research.

koza • Rank 15.9 • Science 44%

Data transformation framework for LinkML data models

nzilbb-labbcat • Rank 5.9 • Science 54%

Client library for communicating with LaBB-CAT servers.

autofolio • Rank 5.9 • Science 54%

Automated Algorithm Selection with Hyperparameter Optimization

https://github.com/zenml-io/zenml • Rank 23.9 • Science 36%

ZenML 🙏: MLOps for Reliable AI: from Classical AI to Agents. https://zenml.io.

urial • Rank 5.9 • Science 54%

Urial (URI Addition tooL) intelligently updates URIs stored in Finder comments of macOS files

https://github.com/awslabs/shuttle • Rank 23.9 • Science 36%

Shuttle is a library for testing concurrent Rust code

vsp • Rank 10.9 • Science 49%

Vintage Sparse PCA for Semi-Parametric Network Analysis

websites-screenshoter • Rank 2.9 • Science 57%

A project to generate windows content for placement-retrieval tasks

@stdlib/stats-base-svariancetk • Rank 2.9 • Science 57%

Calculate the variance of a single-precision floating-point strided array using a one-pass textbook algorithm.

thesis • Rank 2.9 • Science 57%

Towards Transparency and Open Science: A Principled Perspective on Computational Reproducibility and Preregistration

@stdlib/blas-ext-base-gcusumpw • Rank 2.9 • Science 57%

Calculate the cumulative sum of strided array elements using pairwise summation.

systemds • Rank 23.9 • Science 36%

An open source ML system for the end-to-end data science lifecycle

eqcorrscan • Rank 13.9 • Science 46%

Earthquake detection and analysis in Python.

hockeystick • Rank 10.9 • Science 49%

Download and Visualize Essential Global Heating Data in R

https://github.com/bojarlab/candycrunch • Rank 10.9 • Science 49%

Predicting glycan structure from LC-MS/MS data

@cornerstonejs/adapters • Rank 23.9 • Science 36%

Cornerstone is a set of JavaScript libraries that can be used to build web-based medical imaging applications. It provides a framework to build radiology applications such as the OHIF Viewer.

cloud-api-adaptor • Rank 15.9 • Science 44%

Ability to create Kata pods using cloud provider APIs aka the peer-pods approach

@hhhtj/draw.io • Rank 15.9 • Science 44%

draw.io is a JavaScript, client-side editor for general diagramming.

https://github.com/open-mpi/ompi • Rank 23.9 • Science 36%

Open MPI main development repository

ecology-workshop • Rank 5.9 • Science 54%

Ecology Workshop Overview

fire_studio • Rank 5.9 • Science 54%

Movie Making Utilities for FIRE simulations

https://github.com/juliagaussianprocesses/abstractgps.jl • Rank 13.8 • Science 46%

Abstract types and methods for Gaussian Processes.

MATLABDiffEq • Rank 5.8 • Science 54%

Common interface bindings for the MATLAB ODE solvers via MATLAB.jl for the SciML Scientific Machine Learning ecosystem

adaptive • Rank 20.8 • Science 39%

:chart_with_upwards_trend: Adaptive: parallel active learning of mathematical functions