nano-qmflows • Rank 10.8 • Science 77%

Package containing several workflows to compute molecular properties for nanomaterials

prime-commits • Rank 2.8 • Science 85%

PRIME module to extract commits from VCS

evoturb • Rank 2.8 • Science 85%

4D wind field generator

runtest • Rank 10.8 • Science 77%

:clapper: Numerically tolerant end-to-end test library for research software.

qubekit • Rank 10.8 • Science 77%

Quantum Mechanical Bespoke Force Field Derivation Toolkit

perses • Rank 10.8 • Science 77%

Experiments with expanded ensembles to explore chemical space

penquins • Rank 10.8 • Science 77%

A python client for Kowalski

fave • Rank 10.8 • Science 77%

A repository for maintaing the fave-align and fave-extract toolkits

caltechdata-api • Rank 12.7 • Science 75%

Python library for using the CaltechDATA API

pyskani • Rank 10.7 • Science 77%

PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.

QuantumCumulants • Rank 10.7 • Science 77%

Generalized mean-field equations in open quantum systems

embed • Rank 20.7 • Science 67%

Infinity is a high-throughput, low-latency serving engine for text-embeddings, reranking models, clip, clap and colpali

signature-lens • Rank 23.7 • Science 64%

YOLOv5 🚀 in PyTorch > ONNX > CoreML > TFLite

CausalInference • Rank 10.7 • Science 77%

Causal inference, graphical models and structure learning in Julia

rosomaxa • Rank 20.7 • Science 67%

A Vehicle Routing Problem solver

batchtools: Tools for R to work on batch systems • Rank 0.7 • Science 87%

batchtools: Tools for R to work on batch systems - Published in JOSS (2017)

NiTransforms: A Python tool to read, represent, manipulate, and apply $n$-dimensional spatial transforms • Rank 0.7 • Science 87%

NiTransforms: A Python tool to read, represent, manipulate, and apply $n$-dimensional spatial transforms - Published in JOSS (2021)

wam2layers • Rank 10.7 • Science 77%

Atmospheric moisture tracking

bibtexautocomplete • Rank 10.6 • Science 77%

Python package to autocomplete bibtex bibliographies

libsodium • Rank 33.6 • Science 54%

A modern, portable, easy to use crypto library.

chrono • Rank 33.6 • Science 54%

Date and time library for Rust

litgpt • Rank 23.6 • Science 64%

20+ high-performance LLMs with recipes to pretrain, finetune and deploy at scale.

silence • Rank 10.6 • Science 77%

A framework for deploying RESTful APIs and web applications

itensors.jl • Rank 10.5 • Science 77%

A Julia library for efficient tensor computations and tensor network calculations. ITensors.jl is supported by the Simons Foundation's Flatiron Institute.

Caesar • Rank 10.5 • Science 77%

Robust robotic localization and mapping, together with NavAbility(TM). Reach out to info@wherewhen.ai for help.

panstamps • Rank 10.5 • Science 77%

A CL-Util to download stacked and/or warp image stamps from the STScI PanSTARRS image server

deepsensor • Rank 12.5 • Science 75%

A Python package for tackling diverse environmental prediction tasks with NPs.

smif • Rank 10.5 • Science 77%

Simulation Modelling Integration Framework

perun • Rank 12.5 • Science 75%

Perun is a Python package that measures the energy consumption of your applications.

networkanalysis-ts • Rank 10.5 • Science 77%

TypeScript port of the Java networkanalysis package that provides data structures and algorithms for network analysis.

respR • Rank 10.5 • Science 77%

respR - Analyse, convert, and automate respirometry-related and time-series data

decode • Rank 12.5 • Science 75%

:zap: DESHIMA code for data analysis

BestieTemplate • Rank 10.5 • Science 77%

Template for Julia Programming Language packages using the copier engine.

lm-eval • Rank 28.4 • Science 59%

A framework for few-shot evaluation of language models.

neutralocean • Rank 10.4 • Science 77%

Calculate neutral surfaces in the ocean, using Python

graphein • Rank 10.4 • Science 77%

Protein Graph Library

bolognese • Rank 20.4 • Science 67%

Ruby gem and command-line utility for conversion of DOI metadata

kartograf • Rank 10.4 • Science 77%

This package contains tools for setting up hybrid-topology FE calculations

lumin • Rank 10.4 • Science 77%

LUMIN - a deep learning and data science ecosystem for high-energy physics.

manticore • Rank 23.4 • Science 64%

Symbolic execution tool

tidalpy • Rank 10.4 • Science 77%

Software suite to perform solid-body tidal dissipation calculations for rocky and icy worlds

mujoco_mpc • Rank 10.4 • Science 77%

Real-time behaviour synthesis with MuJoCo, using Predictive Control

epydemic • Rank 10.3 • Science 77%

Epidemic processes on networks in Python

pymoten • Rank 10.3 • Science 77%

Motion energy features from video

dockstore • Rank 10.3 • Science 77%

An app store for scientific workflows, tools, notebooks, and services

https://github.com/mir-group/allegro • Rank 20.3 • Science 67%

Allegro is an open-source code for building highly scalable and accurate equivariant deep learning interatomic potentials

pyfastani • Rank 10.3 • Science 77%

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

pmp-library • Rank 10.3 • Science 77%

The Polygon Mesh Processing Library

dpgen • Rank 10.3 • Science 77%

The deep potential generator to generate a deep-learning based model of interatomic potential energy and force field

asdf • Rank 23.2 • Science 64%

ASDF (Advanced Scientific Data Format) is a next generation interchange format for scientific data

transformers • Rank 10.2 • Science 77%

gget • Rank 20.2 • Science 67%

🧬 gget enables efficient querying of genomic reference databases

https://github.com/aspuru-guzik-group/selfies • Rank 20.2 • Science 67%

Robust representation of semantically constrained graphs, in particular for molecules in chemistry

com.tdunning:t-digest • Rank 33.2 • Science 54%

A new data structure for accurate on-line accumulation of rank-based statistics such as quantiles and trimmed means

mtress • Rank 10.2 • Science 77%

@uwdata/mosaic-core • Rank 22.2 • Science 65%

An extensible framework for linking databases and interactive views.

awesome-implicit-nerf-robotics • Rank 10.2 • Science 77%

A comprehensive list of Implicit Representations and NeRF papers relating to Robotics/RL domain, including papers, codes, and related websites

PencilArrays • Rank 10.1 • Science 77%

Distributed Julia arrays using the MPI protocol

yaib • Rank 10.1 • Science 77%

🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109

mmpretrain • Rank 23.1 • Science 64%

OpenMMLab Pre-training Toolbox and Benchmark

pycuda • Rank 23.1 • Science 64%

CUDA integration for Python, plus shiny features

difftastic • Rank 33.1 • Science 54%

a structural diff that understands syntax 🟥🟩

auto-sklearn • Rank 23.1 • Science 64%

Automated Machine Learning with scikit-learn

AlgebraicPetri • Rank 10.1 • Science 77%

Build Petri net models compositionally

flashrank • Rank 20.1 • Science 67%

Lite & Super-fast re-ranking for your search & retrieval pipelines. Supports SoTA Listwise and Pairwise reranking based on LLMs and cross-encoders and more. Created by Prithivi Da, open for PRs & Collaborations.

xarray-einstats • Rank 20.1 • Science 67%

Stats, linear algebra and einops for xarray

openff-interchange • Rank 10.0 • Science 77%

A project (and object) for storing, manipulating, and converting molecular mechanics data.

gunrock • Rank 10.0 • Science 77%

Programmable CUDA/C++ GPU Graph Analytics

pyopencl • Rank 23.0 • Science 64%

OpenCL integration for Python, plus shiny features

ezknitr: Avoid the Typical Working Directory Pain When Using 'knitr' • Rank 0.0 • Science 87%

ezknitr: Avoid the Typical Working Directory Pain When Using 'knitr' - Published in JOSS (2016)

PsychoPhysioCollector: A Smartphone-Based Data Collection App for Psychophysiological Research • Rank 0.0 • Science 87%

PsychoPhysioCollector: A Smartphone-Based Data Collection App for Psychophysiological Research - Published in JOSS (2016)

Critical care data processing tools • Rank 0.0 • Science 87%

Critical care data processing tools - Published in JOSS (2017)

mpnum: A matrix product representation library for Python • Rank 0.0 • Science 87%

mpnum: A matrix product representation library for Python - Published in JOSS (2017)

Altair: Interactive Statistical Visualizations for Python • Rank 0.0 • Science 87%

Altair: Interactive Statistical Visualizations for Python - Published in JOSS (2018)

STEDY: Software for TEnsegrity DYnamics • Rank 0.0 • Science 87%

STEDY: Software for TEnsegrity DYnamics - Published in JOSS (2019)

ComPlot — Peer-reviewed • Rank 0.0 • Science 87%

ComPlot: Comparison Plotter to visually evaluate ocean model simulations - Published in JOSS (2017)

https://github.com/jolars/qualpal • Rank 0.0 • Science 87%

treex: a Python package for manipulating rooted trees • Rank 0.0 • Science 87%

treex: a Python package for manipulating rooted trees - Published in JOSS (2019)

c14bazAAR: An R package for downloading and preparing C14 dates from different source databases • Rank 0.0 • Science 87%

c14bazAAR: An R package for downloading and preparing C14 dates from different source databases - Published in JOSS (2019)

Capytaine: a Python-based linear potential flow solver • Rank 0.0 • Science 87%

Capytaine: a Python-based linear potential flow solver - Published in JOSS (2019)

The Pulmonary Agent-based Infection simulator (PAI): A Multi-Scale Agent-Based Model of Pulmonary Host-Pathogen Interactions • Rank 0.0 • Science 87%

The Pulmonary Agent-based Infection simulator (PAI): A Multi-Scale Agent-Based Model of Pulmonary Host-Pathogen Interactions - Published in JOSS (2026)

RAILS and Cobbler: Scaffolding and automated finishing of draft genomes using long DNA sequences • Rank 0.0 • Science 87%

RAILS and Cobbler: Scaffolding and automated finishing of draft genomes using long DNA sequences - Published in JOSS (2016)

bittrex: An R client for the Bittrex Crypto-Currency Exchange • Rank 0.0 • Science 87%

bittrex: An R client for the Bittrex Crypto-Currency Exchange - Published in JOSS (2017)

LinearMPC.jl: A Julia Package for Embedded Linear Model Predictive Control • Rank 0.0 • Science 87%

LinearMPC.jl: A Julia Package for Embedded Linear Model Predictive Control - Published in JOSS (2026)

libqcpp: A C++14 sequence quality control library • Rank 0.0 • Science 87%

libqcpp: A C++14 sequence quality control library - Published in JOSS (2017)

EvoVis: Dashboard for Visualizing Evolutionary Neural Architecture Search Algorithms • Rank 0.0 • Science 87%

EvoVis: Dashboard for Visualizing Evolutionary Neural Architecture Search Algorithms - Published in JOSS (2025)

Speckle Cn2 Profiler: Improving Satellite Communications with Machine Learning • Rank 0.0 • Science 87%

Speckle Cn2 Profiler: Improving Satellite Communications with Machine Learning - Published in JOSS (2025)

AdditiveFOAM: A Continuum Multiphysics Code for Additive Manufacturing • Rank 0.0 • Science 87%

AdditiveFOAM: A Continuum Multiphysics Code for Additive Manufacturing - Published in JOSS (2025)

Topography-based surface water modeling in Julia, with support for infiltration and temporal developments • Rank 0.0 • Science 87%

Topography-based surface water modeling in Julia, with support for infiltration and temporal developments - Published in JOSS (2025)

MAFw: A Modular Analysis Framework for Streamlining and Optimizing Data Analysis Workflows • Rank 0.0 • Science 87%

MAFw: A Modular Analysis Framework for Streamlining and Optimizing Data Analysis Workflows - Published in JOSS (2025)

FACILE-RS: archiving and long-term preservation of research software repositories made easy • Rank 0.0 • Science 87%

FACILE-RS: archiving and long-term preservation of research software repositories made easy - Published in JOSS (2025)

StochasticDominance.jl: A Julia Package for Higher Order Stochastic Dominance • Rank 0.0 • Science 87%

StochasticDominance.jl: A Julia Package for Higher Order Stochastic Dominance - Published in JOSS (2025)

FSML – A Modern Fortran Statistics and Machine Learning Library • Rank 0.0 • Science 87%

FSML – A Modern Fortran Statistics and Machine Learning Library - Published in JOSS (2025)

gigs: A package for standardising fetal, neonatal, and child growth assessment • Rank 0.0 • Science 87%

gigs: A package for standardising fetal, neonatal, and child growth assessment - Published in JOSS (2025)

Reggae: A Parametric Tuner for PBJam, and a Visualization Tool for Red Giant Oscillation Spectra • Rank 0.0 • Science 87%

Reggae: A Parametric Tuner for PBJam, and a Visualization Tool for Red Giant Oscillation Spectra - Published in JOSS (2024)

pyPLNmodels: A Python package to analyze multivariate high-dimensional count data • Rank 0.0 • Science 87%

pyPLNmodels: A Python package to analyze multivariate high-dimensional count data - Published in JOSS (2024)

Miop: a modular pipeline for 3D reconstruction from scanning electron microscope images • Rank 0.0 • Science 87%

Miop: a modular pipeline for 3D reconstruction from scanning electron microscope images - Published in JOSS (2025)

ASIMTools: A lightweight framework for scalable and reproducible atomic simulations • Rank 0.0 • Science 87%

ASIMTools: A lightweight framework for scalable and reproducible atomic simulations - Published in JOSS (2024)

ReSurfEMG: A Python library for preprocessing and analysis of respiratory EMG. • Rank 0.0 • Science 87%

ReSurfEMG: A Python library for preprocessing and analysis of respiratory EMG. - Published in JOSS (2023)

Diart: A Python Library for Real-Time Speaker Diarization • Rank 0.0 • Science 87%

Diart: A Python Library for Real-Time Speaker Diarization - Published in JOSS (2024)