Updated 6 months ago

articledownloader • Rank 12.2 • Science 72%

Uses publisher APIs to programmatically retrieve scientific journal articles for text mining.

Updated 6 months ago

pycortex • Rank 17.2 • Science 67%

Pycortex is a python-based toolkit for surface visualization of fMRI data

Updated 6 months ago

open-grid-emissions • Rank 7.0 • Science 77%

Tools for producing high-quality hourly generation and emissions data for U.S. electric grids

Updated 6 months ago

forefire • Rank 7.0 • Science 77%

ForeFire is an open-source code for wildland fire spread models

Updated 6 months ago

harmonica • Rank 16.9 • Science 67%

Forward modeling, inversion, and processing gravity and magnetic data

Updated 6 months ago

sqlmodel • Rank 29.9 • Science 54%

SQL databases in Python, designed for simplicity, compatibility, and robustness.

Updated 6 months ago

sidetrack • Rank 8.9 • Science 75%

Simple debug tracing package for Python, with optimization support.

Updated 6 months ago

brainrender • Rank 16.8 • Science 67%

A Python package to visualise neuroanatomical data in atlas space

Updated 6 months ago

celltypist • Rank 16.7 • Science 67%

A tool for semi-automatic cell type classification

Earth and Environmental Sciences (40%) Economics (40%)
Updated 6 months ago

splendaq • Rank 6.7 • Science 77%

Splendid Data Acquisition for small physics experiments

Scientific Software
Updated 6 months ago

OpenOmics — Peer-reviewed • Rank 6.7 • Science 77%

OpenOmics: A bioinformatics API to integrate multi-omics datasets and interface with public databases. - Published in JOSS (2021)

Mathematics Sociology Biology
Scientific Software · Peer-reviewed
Updated 6 months ago

xarray-dataclasses • Rank 16.6 • Science 67%

:zap: xarray data creation by data classes

Updated 6 months ago

islpy • Rank 19.6 • Science 64%

Python wrapper for isl, an integer set library

Updated 6 months ago

teaser • Rank 16.5 • Science 67%

TEASER - Tool for Energy Analysis and Simulation for Efficient Retrofit

Updated 6 months ago

click-extra • Rank 16.5 • Science 67%

🌈 Drop-in replacement for Click to make user-friendly and colorful CLI

Updated 6 months ago

jellyfish • Rank 29.4 • Science 54%

🪼 a python library for doing approximate and phonetic matching of strings.

Updated 6 months ago

neat-python • Rank 19.4 • Science 64%

Python implementation of the NEAT neuroevolution algorithm

Updated 6 months ago

astroquery • Rank 24.3 • Science 59%

Functions and classes to access online data resources. Maintainers: @keflavich and @bsipocz and @ceb8

Updated 6 months ago

prmon • Rank 6.2 • Science 77%

Standalone monitor for process resource consumption

Updated 6 months ago

xgcm • Rank 19.2 • Science 64%

python package for analyzing general circulation model output data

Updated 6 months ago

CityEnergyAnalyst • Rank 16.1 • Science 67%

The City Energy Analyst (CEA) is an open-source urban building energy modeling (UBEM) platform and computation tool for the design of low-carbon and highly efficient cities.

Updated 6 months ago

sumt • Rank 6.1 • Science 77%

Computes consensus trees and other phylogenetic tree summaries

Updated 6 months ago

meshpy • Rank 19.1 • Science 64%

2D/3D simplicial mesh generator interface for Python (Triangle, TetGen, gmsh)

Updated 6 months ago

scikit-surgeryfred • Rank 6.0 • Science 77%

FRED provides an interactive demonstration of fiducial based registration for teaching purposes

Updated 6 months ago

gt4sd • Rank 16.0 • Science 67%

GT4SD, an open-source library to accelerate hypothesis generation in the scientific discovery process.

Updated 6 months ago

pyprep • Rank 16.0 • Science 67%

PyPREP: A Python implementation of the Preprocessing Pipeline (PREP) for EEG data

Updated 6 months ago

jcclass • Rank 5.9 • Science 77%

Automated gridded version of the Jenkinson-Collison classification.

Updated 6 months ago

susi • Rank 5.8 • Science 77%

SuSi: Python package for unsupervised, supervised and semi-supervised self-organizing maps (SOM)

Updated 6 months ago

mbuild • Rank 15.8 • Science 67%

A hierarchical, component based molecule builder

Updated 6 months ago

farm-haystack • Rank 28.7 • Science 54%

AI orchestration framework to build customizable, production-ready LLM applications. Connect components (models, vector DBs, file converters) to pipelines or agents that can interact with your data. With advanced retrieval methods, it's best suited for building RAG, question answering, semantic search or conversational agent chatbots.

Updated 6 months ago

nlpo3 • Rank 15.7 • Science 67%

Thai natural language processing library in Rust, with Python and Node bindings.

Updated 6 months ago

cf-python • Rank 15.7 • Science 67%

A CF-compliant Earth Science data analysis library

Updated 6 months ago

pyart • Rank 23.6 • Science 59%

The Python-ARM Radar Toolkit. A data model driven interactive toolkit for working with weather radar data.

Updated 6 months ago

attrs • Rank 36.6 • Science 46%

Python Classes Without Boilerplate

Updated 6 months ago

https://github.com/stfc/psyclone • Rank 15.5 • Science 67%

PSyclone is a source-to-source Fortran compiler designed to programmatically optimise, parallelise and instrument HPC applications via user-provided transformation scripts.

Updated 6 months ago

lexicalrichness • Rank 15.5 • Science 67%

:smile_cat: :speech_balloon: A module to compute textual lexical richness (aka lexical diversity).

Updated 6 months ago

egu22pygmt • Rank 5.5 • Science 77%

Crafting beautiful maps with PyGMT at EGU22

Scientific Software
Updated 6 months ago

geemap — Peer-reviewed • Rank 23.4 • Science 59%

geemap: A Python package for interactive mapping with Google Earth Engine - Published in JOSS (2020)

Updated 6 months ago

geovista • Rank 15.4 • Science 67%

Cartographic rendering and mesh analytics powered by PyVista 🌍

Updated 6 months ago

at3d • Rank 5.3 • Science 77%

Retrieves 3D cloud properties from multi-angle images of reflected solar radiation

Updated 6 months ago

py3dep • Rank 15.3 • Science 67%

A part of HyRiver software stack for getting topography data within the US through 3D Elevation Program (3DEP)

Updated 6 months ago

egglog • Rank 15.1 • Science 67%

Python bindings for the egg-smol rust library

Updated 6 months ago

pymbolic • Rank 18.1 • Science 64%

A simple package to do symbolic math (focus on code gen and DSLs)

Updated 6 months ago

psvwave • Rank 5.1 • Science 77%

Forward code for the P-SV wave equation on a staggered grid, with full waveform inversion interfaces. Finite difference approach according to stress-velocity formulation.

Updated 6 months ago

litestar • Rank 28.0 • Science 54%

Production-ready, Light, Flexible and Extensible ASGI API framework | Effortlessly Build Performant APIs

Scientific Software
Updated 6 months ago

Ciclope — Peer-reviewed • Rank 4.9 • Science 77%

Ciclope: micro Computed Tomography to Finite Elements - Published in JOSS (2023)

Mathematics (34%)
Scientific Software · Peer-reviewed
Updated 6 months ago

omegaconf • Rank 27.8 • Science 54%

Flexible Python configuration system. The last one you will ever need.

Updated 6 months ago

geograph • Rank 9.8 • Science 72%

GeoGraph provides a tool for analysing habitat fragmentation and related problems in landscape ecology. GeoGraph builds a geospatially referenced graph from land cover or field survey data and enables graph-based landscape ecology analysis as well as interactive visualizations.

Updated 6 months ago

relaxed • Rank 9.8 • Science 72%

Provides differentiable versions of common HEP operations and objectives.

Updated 6 months ago

clinker • Rank 14.8 • Science 67%

Gene cluster comparison figure generator

Updated 6 months ago

skosprovider • Rank 14.7 • Science 67%

A python abstraction for SKOS vocabularies

Updated 6 months ago

reacnetgenerator • Rank 14.6 • Science 67%

an automatic reaction network generator for reactive molecular dynamics simulation

Updated 6 months ago

manim • Rank 27.6 • Science 54%

A community-maintained Python framework for creating mathematical animations.

Updated 6 months ago

gcs_python • Rank 4.5 • Science 77%

Graduated cylindrical shell CME model in Python

Updated 6 months ago

pygeoogc • Rank 14.4 • Science 67%

A part of HyRiver software stack for accessing ArcGIS RESTful-, WFS-, and WMS-based web services.

Updated 6 months ago

hyperspectral-regression • Rank 4.4 • Science 77%

Code examples for the book chapter "Supervised, Semi-Supervised and Unsupervised Learning for Hyperspectral Regression".

Scientific Software
Updated 6 months ago

BisPy — Peer-reviewed • Rank 4.4 • Science 77%

BisPy: Bisimulation in Python - Published in JOSS (2021)

Updated 6 months ago

vedo • Rank 22.3 • Science 59%

A python module for scientific analysis of 3D data based on VTK and Numpy

Updated 6 months ago

pyaudioanalysis • Rank 22.2 • Science 59%

Python Audio Analysis Library: Feature Extraction, Classification, Segmentation and Applications

Updated 6 months ago

biopython • Rank 32.2 • Science 49%

Official git repository for Biopython (originally converted from CVS)

Updated 6 months ago

anisotropy • Rank 4.0 • Science 77%

Toolkit for the study of seismic anisotropy.

Updated 6 months ago

forestplot • Rank 14.0 • Science 67%

A Python package to make publication-ready but customizable coefficient plots.

Updated 6 months ago

spectrochempy • Rank 14.0 • Science 67%

SpectroChemPy is a framework for processing, analyzing and modeling spectroscopic data for chemistry with Python

Updated 6 months ago

hetnetpy • Rank 13.9 • Science 67%

Hetnets in Python (relocated from dhimmel/hetio)

Updated 6 months ago

pyramid-skosprovider • Rank 13.9 • Science 67%

Attach SKOS providers to a pyramid application