The targets R package
The targets R package: a dynamic Make-like function-oriented pipeline toolkit for reproducibility and high-performance computing - Published in JOSS (2021)
normflows
normflows: A PyTorch Package for Normalizing Flows - Published in JOSS (2023)
Learning from Crowds with Crowd-Kit
Learning from Crowds with Crowd-Kit - Published in JOSS (2024)
Feature-engine
Feature-engine: A Python package for feature engineering for machine learning - Published in JOSS (2021)
impedance.py
impedance.py: A Python package for electrochemical impedance analysis - Published in JOSS (2020)
Augur
Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens - Published in JOSS (2021)
Missingno
Missingno: a missing data visualization suite - Published in JOSS (2018)
Soundata
Soundata: Reproducible use of audio datasets - Published in JOSS (2024)
PySwarms
PySwarms: a research toolkit for Particle Swarm Optimization in Python - Published in JOSS (2018)
CMasher
CMasher: Scientific colormaps for making accessible, informative and 'cmashing' plots - Published in JOSS (2020)
cuallee
cuallee: A Python package for data quality checks across multiple DataFrame APIs - Published in JOSS (2024)
fortran-src
fortran-src: Fortran static analysis infrastructure - Published in JOSS (2025)
corner.py
corner.py: Scatterplot matrices in Python - Published in JOSS (2016)
Hickle
Hickle: A HDF5-based python pickle replacement - Published in JOSS (2018)
PySD
PySD: System Dynamics Modeling in Python - Published in JOSS (2022)
countrycode
countrycode: An R package to convert country names and country codes - Published in JOSS (2018)
open-mastr
open-mastr: A Python Package to Download and Process the German Energy Registry Marktstammdatenregister - Published in JOSS (2024)
icepyx
icepyx: querying, obtaining, analyzing, and manipulating ICESat-2 datasets - Published in JOSS (2023)
Using the tidyverse with terra objects
Using the tidyverse with terra objects: the tidyterra package - Published in JOSS (2023)
eemont
eemont: A Python package that extends Google Earth Engine - Published in JOSS (2021)
opt\_einsum - A Python package for optimizing contraction order for einsum-like expressions
opt\_einsum - A Python package for optimizing contraction order for einsum-like expressions - Published in JOSS (2018)
bayestestR
bayestestR: Describing Effects and their Uncertainty, Existence and Significance within the Bayesian Framework - Published in JOSS (2019)
PerMetrics
PerMetrics: A Framework of Performance Metrics for Machine Learning Models - Published in JOSS (2024)
Regl-Scatterplot
Regl-Scatterplot: A Scalable Interactive JavaScript-based Scatter Plot Library - Published in JOSS (2023)
mlr3
mlr3: A modern object-oriented machine learning framework in R - Published in JOSS (2019)
PySINDy
PySINDy: A comprehensive Python package for robust sparse system identification - Published in JOSS (2022)
NeuroDSP
NeuroDSP: A package for neural digital signal processing - Published in JOSS (2019)
Pose2Sim
Pose2Sim: An open-source Python package for multiview markerless kinematics - Published in JOSS (2022)
Extracting, Computing and Exploring the Parameters of Statistical Models using R
Extracting, Computing and Exploring the Parameters of Statistical Models using R - Published in JOSS (2020)
visdat
visdat: Visualising Whole Data Frames - Published in JOSS (2017)
ReproZip
ReproZip: The Reproducibility Packer - Published in JOSS (2016)
PyAutoLens
PyAutoLens: Open-Source Strong Gravitational Lensing - Published in JOSS (2021)
SIMSOPT
SIMSOPT: A flexible framework for stellarator optimization - Published in JOSS (2021)
osrm
osrm: Interface Between R and the OpenStreetMap-Based Routing Service OSRM - Published in JOSS (2022)
quimb
quimb: A python package for quantum information and many-body calculations - Published in JOSS (2018)
TaylorSeries.jl
TaylorSeries.jl: Taylor expansions in one and several variables in Julia - Published in JOSS (2019)
PreliZ
PreliZ: A tool-box for prior elicitation - Published in JOSS (2023)
Augmentor
Augmentor: An Image Augmentation Library for Machine Learning - Published in JOSS (2017)
exoplanet
exoplanet: Gradient-based probabilistic inference for exoplanet data & other astronomical time series - Published in JOSS (2021)
pyMannKendall
pyMannKendall: a python package for non parametric Mann Kendall family of trend tests. - Published in JOSS (2019)
TextDescriptives
TextDescriptives: A Python package for calculating a large variety of metrics from text - Published in JOSS (2023)
Machine Learning Validation via Rational Dataset Sampling with astartes
Machine Learning Validation via Rational Dataset Sampling with astartes - Published in JOSS (2023)
Pyrodigal
Pyrodigal: Python bindings and interface to Prodigal, an efficient method for gene prediction in prokaryotes - Published in JOSS (2022)
GEMMI
GEMMI: A library for structural biology - Published in JOSS (2022)
Executorlib – Up-scaling Python workflows for hierarchical heterogenous high-performance computing
Executorlib – Up-scaling Python workflows for hierarchical heterogenous high-performance computing - Published in JOSS (2025)
dust_extinction
dust_extinction: Interstellar Dust Extinction Models - Published in JOSS (2024)
cellular_raza
cellular_raza: Cellular Agent-based Modeling from a Clean Slate - Published in JOSS (2025)
bíogo
bíogo: a simple high-performance bioinformatics toolkit for the Go language - Published in JOSS (2017)
DynamicalSystems.jl
DynamicalSystems.jl: A Julia software library for chaos and nonlinear dynamics - Published in JOSS (2018)
qualtRics
qualtRics: retrieve survey data using the Qualtrics API - Published in JOSS (2018)
Linopy
Linopy: Linear optimization with n-dimensional labeled variables - Published in JOSS (2023)
greta
greta: simple and scalable statistical modelling in R - Published in JOSS (2019)
gratia
gratia: An R package for exploring generalized additive models - Published in JOSS (2024)
ggeffects
ggeffects: Tidy Data Frames of Marginal Effects from Regression Models - Published in JOSS (2018)
Physics-Informed Neural networks for Advanced modeling
Physics-Informed Neural networks for Advanced modeling - Published in JOSS (2023)
FURY
FURY: advanced scientific visualization - Published in JOSS (2021)
Pyrokinetics - A Python library to standardise gyrokinetic analysis
Pyrokinetics - A Python library to standardise gyrokinetic analysis - Published in JOSS (2024)
PyAutoFit
PyAutoFit: A Classy Probabilistic Programming Language for Model Composition and Fitting - Published in JOSS (2021)
Visions
Visions: An Open-Source Library for Semantic Data - Published in JOSS (2020)
scikit-posthocs
scikit-posthocs: Pairwise multiple comparison tests in Python - Published in JOSS (2019)
NeuralHydrology --- A Python library for Deep Learning research in hydrology
NeuralHydrology --- A Python library for Deep Learning research in hydrology - Published in JOSS (2022)
MNE-LSL
MNE-LSL: Real-time framework integrated with MNE-Python for online neuroscience research through LSL-compatible devices. - Published in JOSS (2025)
effectsize
effectsize: Estimation of Effect Size Indices and Standardized Parameters - Published in JOSS (2020)
unyt
unyt: Handle, manipulate, and convert data with units in Python - Published in JOSS (2018)
SkyPy
SkyPy: A package for modelling the Universe - Published in JOSS (2021)
ALNS
ALNS: a Python implementation of the adaptive large neighbourhood search metaheuristic - Published in JOSS (2023)
PlatiPy
PlatiPy: Processing Library and Analysis Toolkit for Medical Imaging in Python - Published in JOSS (2023)
Matching
Matching: A Python library for solving matching games - Published in JOSS (2020)
small_gicp
small_gicp: Efficient and parallel algorithms for point cloud registration - Published in JOSS (2024)
Managing Larger Data on a GitHub Repository
Managing Larger Data on a GitHub Repository - Published in JOSS (2018)
Foolbox Native
Foolbox Native: Fast adversarial attacks to benchmark the robustness of machine learning models in PyTorch, TensorFlow, and JAX - Published in JOSS (2020)
A Module for Calibrating Impact Functions in the Climate Risk Modeling Platform CLIMADA
A Module for Calibrating Impact Functions in the Climate Risk Modeling Platform CLIMADA - Published in JOSS (2024)
GCM-Filters
GCM-Filters: A Python Package for Diffusion-based Spatial Filtering of Gridded Data - Published in JOSS (2022)
OpenOA
OpenOA: An Open-Source Codebase For Operational Analysis of Wind Farms - Published in JOSS (2021)
Fast, Consistent Tokenization of Natural Language Text
Fast, Consistent Tokenization of Natural Language Text - Published in JOSS (2018)
f90nml - A Python module for Fortran namelists
f90nml - A Python module for Fortran namelists - Published in JOSS (2019)
performance
performance: An R Package for Assessment, Comparison and Testing of Statistical Models - Published in JOSS (2021)
Aurora
Aurora: An open-source Python implementation of the EMTF package for magnetotelluric data processing using MTH5 and mt_metadata - Published in JOSS (2024)
toqito -- Theory of quantum information toolkit
toqito -- Theory of quantum information toolkit: A Python package for studying quantum information - Published in JOSS (2021)
Calliope
Calliope: a multi-scale energy systems modelling framework - Published in JOSS (2018)
Generating CodeMeta Metadata for R Packages
Generating CodeMeta Metadata for R Packages - Published in JOSS (2017)
mpi4jax
mpi4jax: Zero-copy MPI communication of JAX arrays - Published in JOSS (2021)
eo-tides
eo-tides: Tide modelling tools for large-scale satellite Earth observation analysis - Published in JOSS (2025)
Helper for Bézier Curves, Triangles, and Higher Order Objects
Helper for Bézier Curves, Triangles, and Higher Order Objects - Published in JOSS (2017)
pyABC
pyABC: Efficient and robust easy-to-use approximate Bayesian computation - Published in JOSS (2022)
CloudnetPy
CloudnetPy: A Python package for processing cloud remote sensing data - Published in JOSS (2020)
insight
insight: A Unified Interface to Access Information from Model Objects in R - Published in JOSS (2019)
scores
scores: A Python package for verifying and evaluating models and predictions with xarray - Published in JOSS (2024)
Inscriptis - A Python-based HTML to text conversion library optimized for knowledge extraction from the Web
Inscriptis - A Python-based HTML to text conversion library optimized for knowledge extraction from the Web - Published in JOSS (2021)
torchquad
torchquad: Numerical Integration in Arbitrary Dimensions with PyTorch - Published in JOSS (2021)
EZyRB
EZyRB: Easy Reduced Basis method - Published in JOSS (2018)
optimade-python-tools
optimade-python-tools: a Python library for serving and consuming materials data via OPTIMADE APIs - Published in JOSS (2021)
Nimbus
Nimbus: a Ruby gem to implement Random Forest algorithms in a genomic selection context - Published in JOSS (2017)
OpenSpace
OpenSpace: An open-source astrovisualization framework - Published in JOSS (2017)