Emiproc
Emiproc: A Python package for emission inventory processing - Published in JOSS (2025)
Underworld2
Underworld2: Python Geodynamics Modelling for Desktop, HPC and Cloud - Published in JOSS (2020)
PythonicDISORT
PythonicDISORT: A Python reimplementation of the Discrete Ordinate Radiative Transfer package DISORT - Published in JOSS (2024)
TransBigData
TransBigData: A Python package for transportation spatio-temporal big data processing, analysis and visualization - Published in JOSS (2022)
PyBCI
PyBCI: A Python Package for Brain-Computer Interface (BCI) Design - Published in JOSS (2023)
SleepECG
SleepECG: a Python package for sleep staging based on heart rate - Published in JOSS (2023)
Teaspoon
Teaspoon: A Python Package for Topological Signal Processing - Published in JOSS (2025)
biopeaks
biopeaks: a graphical user interface for feature extraction from heart- and breathing biosignals - Published in JOSS (2020)
quickBayes
quickBayes: An analytical approach to Bayesian marginal likelihoods - Published in JOSS (2025)
rdflib
RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information.
PlanetMapper
PlanetMapper: A Python package for visualising, navigating and mapping Solar System observations - Published in JOSS (2023)
bayes-toolbox
bayes-toolbox: A Python package for Bayesian statistics - Published in JOSS (2023)
archetypal
archetypal: A Python package for collecting, simulating, converting and analyzing building archetypes - Published in JOSS (2020)
idf-analysis
idf-analysis: Heavy rainfall intensity as a function of duration and return period - Published in JOSS (2025)
UQTestFuns
UQTestFuns: A Python3 library of uncertainty quantification (UQ) test functions - Published in JOSS (2023)
Pooltool
Pooltool: A Python package for realistic billiards simulation - Published in JOSS (2024)
dantro
dantro: a Python package for handling, transforming, and visualizing hierarchically structured data - Published in JOSS (2020)
PYDAQ
PYDAQ: Data Acquisition and Experimental Analysis with Python - Published in JOSS (2023)
LobsterPy
LobsterPy: A package to automatically analyze LOBSTER runs - Published in JOSS (2024)
Bodge
Bodge: Python package for efficient tight-binding modeling of superconducting nanostructures - Published in JOSS (2024)
forestatrisk
forestatrisk: a Python package for modelling and forecasting deforestation in the tropics - Published in JOSS (2021)
piglot
piglot: an Open-source Package for Derivative-free Optimisation of Numerical Responses - Published in JOSS (2024)
ParaMonte
ParaMonte: A high-performance serial/parallel Monte Carlo simulation library for C, C++, Fortran - Published in JOSS (2021)
Pyret
Pyret: A Python package for analysis of neurophysiology data - Published in JOSS (2017)
Fastsubtrees
Fastsubtrees: simple and efficient subtrees extractions in Python with applications to NCBI taxonomy - Published in JOSS (2022)
Bluebonnet
Bluebonnet: Scaling solutions for production analysis from unconventional oil and gas wells - Published in JOSS (2023)
VRPy
VRPy: A Python package for solving a range of vehicle routing problems with a column generation approach - Published in JOSS (2020)
ytree
ytree: A Python package for analyzing merger trees - Published in JOSS (2019)
xCDAT
xCDAT: A Python Package for Simple and Robust Analysis of Climate Data - Published in JOSS (2024)
qgs
qgs: A flexible Python framework of reduced-order multiscale climate models - Published in JOSS (2020)
FTorch
FTorch: a library for coupling PyTorch models to Fortran - Published in JOSS (2025)
Your
Your: Your Unified Reader - Published in JOSS (2020)
SimuPy
SimuPy: A Python framework for modeling and simulating dynamical systems - Published in JOSS (2017)
SWMManywhere
SWMManywhere: Synthesise Urban Drainage Network Models Anywhere in the World - Published in JOSS (2025)
Triumvirate
Triumvirate: A Python/C++ package for three-point clustering measurements - Published in JOSS (2023)
PowNet 2.0
PowNet 2.0: A production cost modeling framework for large-scale power systems - Published in JOSS (2025)
DearEIS - A GUI program for analyzing impedance spectra
DearEIS - A GUI program for analyzing impedance spectra - Published in JOSS (2022)
FuseMedML
FuseMedML: a framework for accelerated discovery in machine learning based biomedicine - Published in JOSS (2023)
Jury
Jury: A Comprehensive Evaluation Toolkit - Published in JOSS (2024)
nestcheck
nestcheck: error analysis, diagnostic tests and plots for nested sampling calculations - Published in JOSS (2018)
TorchMetrics - Measuring Reproducibility in PyTorch
TorchMetrics - Measuring Reproducibility in PyTorch - Published in JOSS (2022)
WATTS
WATTS: Workflow and template toolkit for simulation - Published in JOSS (2022)
Bayesian X-ray Analysis (BXA) v4.0
Bayesian X-ray Analysis (BXA) v4.0 - Published in JOSS (2021)
pymnet
pymnet: A Python Library for Multilayer Networks - Published in JOSS (2024)
fRAT
fRAT: an interactive, Python-based tool for region-of-interest summaries of functional imaging data - Published in JOSS (2023)
swyft
swyft: Truncated Marginal Neural Ratio Estimation in Python - Published in JOSS (2022)
Fitspy
Fitspy: A Python package for spectral decomposition - Published in JOSS (2024)
TAXPASTA
TAXPASTA: TAXonomic Profile Aggregation and STAndardisation - Published in JOSS (2023)
AddaxAI
AddaxAI: A no-code platform to train and deploy custom YOLOv5 object detection models - Published in JOSS (2023)
CircuitGraph
CircuitGraph: A Python package for Boolean circuits - Published in JOSS (2020)
Shenfun
Shenfun: High performance spectral Galerkin computing platform - Published in JOSS (2018)
Clouddrift
Clouddrift: a Python package to accelerate the use of Lagrangian data for atmospheric, oceanic, and climate sciences - Published in JOSS (2024)
pyomeca
pyomeca: An Open-Source Framework for Biomechanical Analysis - Published in JOSS (2020)
The Basic Model Interface 2.0
The Basic Model Interface 2.0: A standard interface for coupling numerical models in the geosciences - Published in JOSS (2020)
StreamGen
StreamGen: a Python framework for generating streams of labeled data - Published in JOSS (2024)
CoastSeg
CoastSeg: an accessible and extendable hub for satellite-derived-shoreline (SDS) detection and mapping - Published in JOSS (2024)
scholarly
Retrieve author and publication information from Google Scholar in a friendly, Pythonic way without having to worry about CAPTCHAs!
Plonk
Plonk: Smoothed particle hydrodynamics analysis and visualization with Python - Published in JOSS (2019)
kalepy
kalepy: a Python package for kernel density estimation, sampling and plotting - Published in JOSS (2021)
pocoMC
pocoMC: A Python package for accelerated Bayesian inference in astronomy and cosmology - Published in JOSS (2022)
Fruitbat
Fruitbat: A Python Package for Estimating Redshifts of Fast Radio Bursts - Published in JOSS (2019)
OfflineMOT
OfflineMOT: A Python package for multiple objects detection and tracking from bird view stationary drone videos - Published in JOSS (2022)
PII-Codex
PII-Codex: a Python library for PII detection, categorization, and severity assessment - Published in JOSS (2023)
SetVis
SetVis: Visualizing Large Numbers of Sets and Intersections - Published in JOSS (2024)
py_neuromodulation
py_neuromodulation: Signal processing and decoding for neural electrophysiological recordings - Published in JOSS (2025)
OPEM
OPEM : Open Source PEM Cell Simulation Tool - Published in JOSS (2018)
Osprey
Osprey: Hyperparameter Optimization for Machine Learning - Published in JOSS (2016)
Crowsetta
Crowsetta: A Python tool to work with any format for annotating animal vocalizations and bioacoustics data. - Published in JOSS (2023)
Pyrgg
Pyrgg: Python Random Graph Generator - Published in JOSS (2017)
cottoncandy
cottoncandy: scientific python package for easy cloud storage - Published in JOSS (2018)
ThermoParser
ThermoParser: Streamlined Analysis of Thermoelectric Properties - Published in JOSS (2024)
RIAssigner
RIAssigner: A package for gas chromatographic retention index calculation - Published in JOSS (2022)
Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape
Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape - Published in JOSS (2023)
EcoLogits
EcoLogits: Evaluating the Environmental Impacts of Generative AI - Published in JOSS (2025)
pactus
pactus: A Python framework for trajectory classification - Published in JOSS (2023)
ewstools
ewstools: A Python package for early warning signals of bifurcations in time series data - Published in JOSS (2023)
Connectome Mapper 3
Connectome Mapper 3: A Flexible and Open-Source Pipeline Software for Multiscale Multimodal Human Connectome Mapping - Published in JOSS (2022)
BlueCelluLab
BlueCelluLab: Biologically Detailed Neural Network Experimentation API - Published in JOSS (2024)
DetecTree
DetecTree: Tree detection from aerial imagery in Python - Published in JOSS (2020)
OpenTerrace
OpenTerrace: A fast, flexible and extendable Python framework for thermal energy storage packed bed simulations - Published in JOSS (2024)
RFBzero
RFBzero: A Python package for zero-dimensional simulation of redox flow battery cycling - Published in JOSS (2024)
Scanbot
Scanbot: An STM Automation Bot - Published in JOSS (2024)
WrightTools
WrightTools: a Python package for multidimensional spectroscopy - Published in JOSS (2019)
Python class defining a machine learning dataset ensuring key-based correspondence and maintaining integrity
Python class defining a machine learning dataset ensuring key-based correspondence and maintaining integrity - Published in JOSS (2017)
PICOS
PICOS: A Python interface to conic optimization solvers - Published in JOSS (2022)
fseval
fseval: A Benchmarking Framework for Feature Selection and Feature Ranking Algorithms - Published in JOSS (2022)
qiskit
Qiskit is an open-source SDK for working with quantum computers at the level of extended quantum circuits, operators, and primitives.
DBMS-Benchmarker
DBMS-Benchmarker: Benchmark and Evaluate DBMS in Python - Published in JOSS (2022)
PyUnfold
PyUnfold: A Python package for iterative unfolding - Published in JOSS (2018)
calorine
calorine: A Python package for constructing and sampling neuroevolution potential models - Published in JOSS (2024)
Model dispersion with PRISM; an alternative to MCMC for rapid analysis of models
Model dispersion with PRISM; an alternative to MCMC for rapid analysis of models - Published in JOSS (2019)
funsies
funsies: A minimalist, distributed and dynamic workflow engine - Published in JOSS (2021)
pymcmcstat
pymcmcstat: A Python Package for Bayesian Inference Using Delayed Rejection Adaptive Metropolis - Published in JOSS (2019)
HRV
HRV: a Pythonic package for Heart Rate Variability Analysis - Published in JOSS (2020)