momentuHMM
Maximum likelihood analysis Of animal MovemENT behavior Using multivariate Hidden Markov Models
pyhpc-benchmarks
A suite of benchmarks for CPU and GPU performance of the most popular high-performance libraries for Python :rocket:
detectree2
Python package for automatic tree crown delineation based on the Detectron2 implementation of Mask R-CNN
alignment-handbook
Robust recipes to align language models with human and AI preferences
ezflow
A modular PyTorch library for optical flow estimation using neural networks
https://github.com/cbg-ethz/cowwid
Procedure used for the surveillance of SARS-CoV-2, RSV and Influenza genomic variants in wastewater.
hypermat
Hyperelastic formulations using an algorithmic differentiation with hyper-dual numbers in Python.
ckanext-query-dois
A CKAN extension that creates DOIs for queries on resources.
flashlight-text
Text utilities, including beam search decoding, tokenizing, and more, built for use in Flashlight.
ckanext-attribution
A CKAN extension that adds support for complex attribution.
awesome-open-geoscience
Curated from repositories that make our lives as geoscientists, hackers and data wranglers easier or just more awesome
coolpuppy
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
ControlSystems
A Control Systems Toolbox for Julia
https://github.com/althonos/pyopal
Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.
udocker
A basic user tool to execute simple docker containers in batch or interactive systems without root privileges.
mixscape_seurat
A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq read-out (scCRISPR-seq) powered by the R package Seurat's method Mixscape.
carbon_capture_ml
Survey of all published Carbon Capture ML papers, data, code and supplemental materials for the benefit of all humanity
polyphase-filter-bank-generator
This code generates the filter weights for polyphase filter banks with arbitrary numbers of channels, and with configurable windows.
icub-gazebo-grasping-sandbox
A public sandbox for simulating grasping in Gazebo with the iCub humanoid
mapmos
Building Volumetric Beliefs for Dynamic Environments Exploiting Map-Based Moving Object Segmentation (RAL 2023)
miplearn
Framework for solving discrete optimization problems using a combination of Mixed-Integer Linear Programming (MIP) and Machine Learning (ML)
manoptexamples.jl
🏔️⛷️ ManoptExamples.jl – A collection of research and tutorial example problems for Manopt.jl
https://github.com/py-why/dowhy
DoWhy is a Python library for causal inference that supports explicit modeling and testing of causal assumptions. DoWhy is based on a unified language for causal inference, combining causal graphical models and potential outcomes frameworks.
loopstructural
LoopStructural is an open-source 3D structural geological modelling library.
SciMLSensitivity
A component of the DiffEq ecosystem for enabling sensitivity analysis for scientific machine learning (SciML). Optimize-then-discretize, discretize-then-optimize, adjoint methods, and more for ODEs, SDEs, DDEs, DAEs, etc.
libcommute
A quantum operator algebra domain-specific language and exact diagonalization toolkit for C++11/14/17
codonu
A python project for analysis of codon usage for gene or genome analysis
dmriprep
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Quartet
R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)
neuroconv
Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
paper_bergonti_2022_tro_kinematics-control-morphingcovers
Supplementary Material "Modeling and Control of Morphing Covers for the Adaptive Morphology of Humanoid Robots" published in IEEE Transactions on Robotics 2022
regioncode
Software for converting regional administrative codes (China) over years
spatialwarnings
An R package to compute spatial early-warning signals of ecosystem degradation
metage2metabo
From annotated genomes to metabolic screening in large scale microbiotas
snpsea
:bar_chart: Identify cell types and pathways affected by genetic risk loci.
most
MOST – MATPOWER Optimal Scheduling Tool, for steady-state power systems scheduling problems.
https://github.com/aspuru-guzik-group/qnode
Quantum dynamics latent neural ode
covid-19_7-tage-inzidenz_in_deutschland
Im Datensatz '7-Tage-Inzidenz von COVID-19 in Deutschland' werden die aktuellen 7-Tage-Inzidenzen der nach den Vorgaben des Infektionsschutzgesetzes - IfSG - an das RKI übermittelten COVID-19-Fälle veröffentlicht. Datengrundlage zur Berechnung der 7-Tage-Inzidenzen sind die an das RKI übermittelten COVID-19-Fälle. Eine detaillierte Dokumentation...
shinyssd v1.0
shinyssd v1.0: Species Sensitivity Distributions for Ecotoxicological Risk Assessment - Published in JOSS (2019)
muscle3
The third major version of the MUltiScale Coupling Library and Environment
carma
Converters between Armadillo matrices (C++) and Numpy arrays using Pybind11
rl4co
A PyTorch library for all things Reinforcement Learning (RL) for Combinatorial Optimization (CO)
plutus
plutus: An R package to calculate electricity investments and stranded assets from the Global Change Analysis Model (GCAM) - Published in JOSS (2021)
70-years-of-machine-learning-in-geoscience-in-review
Code to recreate the tutorial and figures in the book chapter.
gnn-pressure-estimation
DiTEC research
https://github.com/cbg-ethz/v-pipe-scout
Rapid Viral Variant Exploration and Detection - Interactive WebApp
DiffEqFlux
Pre-built implicit layer architectures with O(1) backprop, GPUs, and stiff+non-stiff DE solvers, demonstrating scientific machine learning (SciML) and physics-informed machine learning methods
typst
A new markup-based typesetting system that is powerful and easy to learn.
easyfsl
Ready-to-use code and tutorial notebooks to boost your way into few-shot learning for image classification.
yggdrasil-decision-forests
A library to train, evaluate, interpret, and productionize decision forest models such as Random Forest and Gradient Boosted Decision Trees.
DifferentialEquations
Multi-language suite for high-performance solvers of differential equations and scientific machine learning (SciML) components. Ordinary differential equations (ODEs), stochastic differential equations (SDEs), delay differential equations (DDEs), differential-algebraic equations (DAEs), and more in Julia.
recotox
REcoTox is a semi-automated, interactive R workflow to process US EPA ECOTOX Knowledgebase entire database ASCII files
last-mile-routing-analyzer
lmr-analyzer: A powerful toolkit to analyze the interaction between last mile operations and the street network design.
https://github.com/changliao1025/pyearth
A leatherman alike Python package for Earth science
thapbi-pict
Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool
deepsearch-toolkit
Interact with the Deep Search platform for new knowledge explorations and discoveries
https://github.com/aws/aws-cdk
The AWS Cloud Development Kit is a framework for defining cloud infrastructure in code
rliable
[NeurIPS'21 Outstanding Paper] Library for reliable evaluation on RL and ML benchmarks, even with only a handful of seeds.
immuneml
immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
